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BLASTP 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Query= tmpseq_1
(280 letters)
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
353,547 sequences; 107,935,385 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
sp|P21912|DHSB_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE]... 1500 7.0e-200 1
gi|773300 (U17886) succinate dehydrogenase iro... 1164 6.0e-194 2
pir||A34045 succinate dehydrogenase (ubiquinone)... 1403 2.2e-186 1
gi|3851612 (AF095937) succinate dehydrogenase I... 1263 1.5e-167 2
gnl|PID|d1024621 (AB008568) iron-sulfur subunit of su... 958 2.1e-124 1
sp|P21801|DHSB_YEAST SUCCINATE DEHYDROGENASE (UBIQUINONE)... 520 2.8e-122 2
gnl|PID|d1024622 (AB008569) iron-sulfur subunit of mi... 927 4.4e-120 1
sp|Q09545|DHSB_CAEEL PUTATIVE SUCCINATE DEHYDROGENASE [UB... 927 4.4e-120 1
sp|P80480|DHSB_RECAM SUCCINATE DEHYDROGENASE (UBIQUINONE)... 450 2.1e-111 4
gnl|PID|e341165 (Z99091) succinate dehydrogenase [Sc... 443 9.5e-108 3
gnl|PID|d1013807 (D86574) iron-sulfur subunit of succ... 830 9.9e-107 2
sp|Q59662|DHSB_PARDE SUCCINATE DEHYDROGENASE IRON-SULFUR ... 459 6.3e-105 4
gi|3169725 (AF007569) succinate dehydrogenase i... 442 1.2e-102 3
sp|P21913|DHSB_RAT SUCCINATE DEHYDROGENASE [UBIQUINONE]... 786 1.9e-100 1
sp|P32420|DHSB_USTMA SUCCINATE DEHYDROGENASE (UBIQUINONE)... 484 1.2e-98 2
gnl|PID|d1035634 (D89861) succinate dehydrogenase iro... 448 1.7e-97 4
pir||S32824 succinate dehydrogenase (ubiquinone)... 473 4.1e-97 2
sp|P48933|DHSB_CYACA SUCCINATE DEHYDROGENASE (UBIQUINONE)... 434 9.6e-95 4
gi|3851608 (AF095935) succinate dehydrogenase I... 741 3.5e-94 1
gi|3851610 (AF095936) succinate dehydrogenase I... 739 6.7e-94 1
pir||C32394 succinate dehydrogenase (ubiquinone)... 734 3.3e-93 1
sp|P48932|DHSB_CHOCR SUCCINATE DEHYDROGENASE (UBIQUINONE)... 411 4.0e-92 4
gi|4106930 (AF114794) succinate:cytochrome c ox... 411 1.3e-90 4
sp|P80477|DHSB_PORPU SUCCINATE DEHYDROGENASE (UBIQUINONE)... 411 1.3e-90 4
gnl|PID|e1342358 (AJ235270) SUCCINATE DEHYDROGENASE I... 481 1.2e-89 3
pir||A56660 succinate dehydrogenase (ubiquinone)... 656 2.4e-82 1
gnl|PID|e325438 (Y13760) succinate dehydrogenase put... 402 1.0e-75 3
gnl|PID|d1032168 (AB015757) fumarate reductase iron-s... 386 9.4e-72 5
sp|P07014|DHSB_ECOLI SUCCINATE DEHYDROGENASE IRON-SULFUR ... 398 7.6e-71 4
sp|P21914|DHSB_DROME SUCCINATE DEHYDROGENASE (UBIQUINONE)... 553 5.4e-68 1
gi|474053 (X75827) succinate dehydrogenase sub... 546 5.1e-67 1
gi|474063 (X75829) succinate dehydrogenase sub... 537 9.1e-66 1
sp|P51053|DHSB_COXBU SUCCINATE DEHYDROGENASE IRON-SULFUR ... 375 3.0e-65 3
pir||S42873 succinate dehydrogenase (EC 1.3.99.1... 375 3.1e-65 4
gi|474051 (X75826) succinate dehydrogenase sub... 517 5.5e-63 1
gi|474057 (X75830) succinate dehydrogenase sub... 510 5.2e-62 1
gnl|PID|e1312401 (AJ231124) z62f [Vibrio cholerae] 363 2.8e-61 2
gnl|PID|d1023371 (AB007361) iron-sulfur protein subun... 498 2.5e-60 1
gnl|PID|e1217194 (Y15942) succinate dehydrogenase iro... 491 2.3e-59 1
sp|O42772|DHSB_MYCGR SUCCINATE DEHYDROGENASE (UBIQUINONE)... 485 1.6e-58 1
gi|474043 (X75822) succinate dehydrogenase sub... 477 2.1e-57 1
sp|P21911|DHSB_SCHPO SUCCINATE DEHYDROGENASE (UBIQUINONE)... 349 2.4e-55 3
sp|P21915|DHSB_ARATH SUCCINATE DEHYDROGENASE (UBIQUINONE)... 350 6.3e-55 3
gi|150368 (J03844) ORF2 [Neisseria gonorrhoeae] 255 6.3e-53 5
gi|474049 (X75825) succinate dehydrogenase sub... 391 2.0e-45 1
gi|2649932 (AE001057) succinate dehydrogenase, ... 157 2.8e-43 3
gi|474045 (X75823) succinate dehydrogenase sub... 375 3.3e-43 1
gi|474047 (X75824) succinate dehydrogenase sub... 361 2.9e-41 1
gnl|PID|e263860 (Y07709) SDH subunit B-homologue; ir... 154 3.4e-37 5
sp|Q10761|FRDB_MYCTU FUMARATE REDUCTASE IRON-SULFUR PROTE... 243 5.5e-36 2
gnl|PID|e1251151 (AL021841) sdhB [Mycobacterium tuber... 181 6.2e-35 3
pir||S73040 L308_F1_28 protein - Mycobacterium l... 174 7.7e-34 3
pir||S34619 probable fumarate reductase - Thermo... 198 3.6e-31 2
gnl|PID|e276896 (Y09041) succinate dehydrogenase sub... 125 1.4e-27 4
gnl|PID|e1313723 (AJ005961) succinate dehydrogenase, ... 121 9.0e-27 4
gi|3184554 (AF052290) succinate dehydrogenase i... 131 4.1e-26 5
gnl|PID|d1011184 (D64003) succinate dehydrogenase iro... 114 6.6e-25 5
pir||G64097 fumarate reductase, iron-sulfur prot... 109 1.2e-24 5
sp|P44893|FRDB_HAEIN FUMARATE REDUCTASE IRON-SULFUR PROTE... 109 1.2e-24 5
gi|474041 (X75831) succinate dehydrogenase sub... 233 2.0e-23 1
sp|P17596|FRDB_WOLSU FUMARATE REDUCTASE IRON-SULFUR PROTE... 128 6.4e-23 5
gi|4154696 (AE001456) Fumarate reductase [Helic... 131 2.1e-22 5
sp|P00364|FRDB_ECOLI FUMARATE REDUCTASE IRON-SULFUR PROTE... 116 4.5e-22 4
sp|P20921|FRDB_PROVU FUMARATE REDUCTASE IRON-SULFUR PROTE... 111 1.8e-21 5
sp|Q57557|Y092_METJA PUTATIVE IRON-SULFUR PROTEIN MJ0092 ... 112 3.1e-21 6
sp|O06914|FRDB_HELPY FUMARATE REDUCTASE IRON-SULFUR PROTE... 125 4.5e-21 5
gi|2058520 (U78101) FrdB [Helicobacter pylori] 125 4.5e-21 5
gnl|PID|d1018504 (D90909) succinate dehydrogenase iro... 132 1.3e-19 4
gi|2983184 (AE000695) fumarate reductase iron-s... 110 3.5e-18 5
gi|2622985 (AE000937) fumarate reductase [Metha... 108 2.0e-15 7
gnl|PID|e1251906 (AJ000942) Thiol:fumarate reductase ... 113 2.6e-15 7
gnl|PID|e1252445 (AL021929) hypothetical protein Rv02... 102 2.5e-14 3
gi|2983251 (AE000700) fumarate reductase iron-s... 118 9.3e-14 3
gi|3329035 (AE001330) Succinate Dehydrogenase [... 84 1.9e-13 4
sp|P08066|DHSB_BACSU SUCCINATE DEHYDROGENASE IRON-SULFUR ... 90 2.1e-12 4
gnl|PID|e274121 (Y08563) succinate dehydrogenase sub... 77 1.3e-11 4
gi|474055 (X75828) succinate dehydrogenase sub... 148 1.4e-11 1
gi|882507 (U28377) ORF_f761 [Escherichia coli]... 66 0.0017 2
sp|P52074|GLCF_ECOLI GLYCOLATE OXIDASE IRON-SULFUR SUBUNI... 66 0.0018 2
gi|2650080 (AE001067) conserved hypothetical pr... 69 0.0032 2
gi|2649958 (AE001059) heterodisulfide reductase... 69 0.0083 2
gi|142967 (M17642) succinate dehydrogenase [Ba... 73 0.0087 2
gi|2650081 (AE001067) conserved hypothetical pr... 77 0.0095 2
gi|2983066 (AE000688) heterodisulfide reductase... 59 0.052 2
gnl|PID|e1165318 (Z75208) hypothetical protein [Bacil... 59 0.35 2
gi|2649852 (AE001052) heterodisulfide reductase... 46 0.59 3
gi|2865517 (AF044577) Fe-hydrogenase alpha subu... 59 0.77 2
pir||S39893 rnfC protein - Rhodobacter capsulatu... 68 0.85 1
gnl|PID|e1285080 (Y16191) echF [Methanosarcina barkeri] 50 0.88 2
gi|2323282 (AF000719) heme oxygenase [Rhodella ... 67 0.93 1
sp|P77536|YKGF_ECOLI HYPOTHETICAL 53.1 KD PROTEIN IN EAEH... 53 0.97 2
gi|2650070 (AE001066) reductase, iron-sulfur bi... 66 0.97 1
sp|Q56224|NQO9_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN... 63 0.994 2
gnl|PID|d1030283 (AP000001) 630aa long hypothetical p... 60 0.998 2
gi|2623016 (AE000940) heterodisulfide reductase... 53 0.999 2
sp|P22318|HOXU_ALCEU NAD-REDUCING HYDROGENASE HOXS GAMMA ... 64 0.999 1
gnl|PID|e1330390 (AJ001137) nicotine metabolization e... 64 0.999 1
gi|3789797 (AF059569) actin binding protein MAY... 63 0.99991 1
gi|4102963 (AF017746) ladder protein [Caenorhab... 63 0.99991 1
gnl|PID|d1035430 (AB018272) KIAA0729 protein [Homo sa... 63 0.99991 1
sp|P21912|DHSB_HUMAN SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR
PROTEIN PRECURSOR (IP) (IP SUBUNIT OF COMPLEX II) gi|665925
(U17248) succinate dehydrogenase iron-protein subunit [Homo sapiens]
Length = 280
Score = 1500 (694.0 bits), Expect = 7.0e-200, P = 7.0e-200
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT 60
MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT
Sbjct: 1 MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT 60
Query: 61 YKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN 120
YKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN
Sbjct: 61 YKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN 120
Query: 121 LNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKL 180
LNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKL
Sbjct: 121 LNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKL 180
Query: 181 DGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSL 240
DGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSL
Sbjct: 181 DGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSL 240
Query: 241 YRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV 280
YRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV
Sbjct: 241 YRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV 280
gi|773300 (U17886) succinate dehydrogenase iron-protein subunit B [Homo
sapiens]
Length = 281
Score = 335 (155.0 bits), Expect = 6.0e-194, Sum P(2) = 6.0e-194
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT 60
MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT
Sbjct: 1 MAAVVALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQT 60
Query: 61 YKVDLN 66
Y+VDLN
Sbjct: 61 YEVDLN 66
Score = 1164 (538.5 bits), Expect = 6.0e-194, Sum P(2) = 6.0e-194
Identities = 214/215 (99%), Positives = 215/215 (100%)
Query: 66 NKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVS 125
N+CGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVS
Sbjct: 67 NRCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVS 126
Query: 126 KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYE 185
KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYE
Sbjct: 127 KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYE 186
Query: 186 CILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHT 245
CILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHT
Sbjct: 187 CILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHT 246
Query: 246 IMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV 280
IMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV
Sbjct: 247 IMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKASV 281
pir||A34045 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) 27K
iron-sulfur protein precursor, mitochondrial - human (fragment)
gi|180917 (M32246) succinate-ubiquinone oxidoreductase Ip subunit
precursor [Homo sapiens] gnl|PID|d1001558 (D10245)
succinate-ubiquinone oxidoreductase iron sulfur subunit [Homo sapiens]
Length = 262
Score = 1403 (649.1 bits), Expect = 2.2e-186, P = 2.2e-186
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 22 CLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKN 81
CLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKN
Sbjct: 4 CLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKN 63
Query: 82 EVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVP 141
EVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVP
Sbjct: 64 EVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVP 123
Query: 142 DLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWW 201
DLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWW
Sbjct: 124 DLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWW 183
Query: 202 NGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGK 261
NGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGK
Sbjct: 184 NGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGK 243
Query: 262 AIAEIKKMMATYKEKKASV 280
AIAEIKKMMATYKEKKASV
Sbjct: 244 AIAEIKKMMATYKEKKASV 262
gi|3851612 (AF095937) succinate dehydrogenase Ip subunit [Gallus gallus]
Length = 290
Score = 46 (21.3 bits), Expect = 1.5e-167, Sum P(2) = 1.5e-167
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 2 AAVVALSLRRRLPATTL 18
AAVV +SLRR +PA L
Sbjct: 3 AAVVGVSLRRGVPARFL 19
Score = 1263 (584.3 bits), Expect = 1.5e-167, Sum P(2) = 1.5e-167
Identities = 227/253 (89%), Positives = 244/253 (96%)
Query: 27 RGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDST 86
RGAQTAAA RIKKF+IYRWDPDK GDKP MQTY+VDLNKCGPMVLDALIKIKNE+DST
Sbjct: 37 RGAQTAAAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDST 96
Query: 87 LTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNF 146
LTFRRSCREGICGSCAMNI GGNTLACT++ID +L+K +KIYPLPHMYV+KDLVPDLSNF
Sbjct: 97 LTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNF 156
Query: 147 YAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKY 206
YAQYKSIEPYLKKKDES++GK+QYLQSIE+R+KLDGLYECILCACCSTSCPSYWWNGDKY
Sbjct: 157 YAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKY 216
Query: 207 LGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEI 266
LGPAVLMQAYRWMIDSRDD+TEERLA+LQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEI
Sbjct: 217 LGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEI 276
Query: 267 KKMMATYKEKKAS 279
KKMMATYKEK A+
Sbjct: 277 KKMMATYKEKAAA 289
gnl|PID|d1024621 (AB008568) iron-sulfur subunit of succinate
dehydrogenase [Ascaris suum]
Length = 282
Score = 958 (443.2 bits), Expect = 2.1e-124, P = 2.1e-124
Identities = 175/250 (70%), Positives = 204/250 (81%)
Query: 29 AQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLT 88
A AA T RIK F IYR++P++ G KP +Q + VDL+KCG MVLDALIKIKNEVD TLT
Sbjct: 25 ATAAAPTGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLT 84
Query: 89 FRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYA 148
FRRSCREGICGSCAMNI G NTLAC ID N +K +KIYPLPHM+VIKDLVPD++ FYA
Sbjct: 85 FRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYA 144
Query: 149 QYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG 208
QY SI+P+L+KK + G++Q QSI+E+EKLDGLYECILCACCS SCPSYWWN DKYLG
Sbjct: 145 QYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLG 204
Query: 209 PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKK 268
PAVLMQAYRW+IDSRDD ERLA++QD FS ++CHTIMNCT+TCPK LNP +AI EIK
Sbjct: 205 PAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKM 264
Query: 269 MMATYKEKKA 278
++ K K A
Sbjct: 265 LLTKMKTKPA 274
sp|P21801|DHSB_YEAST SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN PRECURSOR (IP) pir||RDBYIS succinate dehydrogenase
(ubiquinone) (EC 1.3.5.1) iron-sulfur protein precursor - yeast
(Saccharomyces cerevisiae) gi|172549 (J05487) succinate
dehydrogenase iron-protein subunit (SDH) (EC 1.3.99.1)
[Saccharomyces cerevisiae] gnl|PID|e245469 (Z73146) ORF YLL041c
[Saccharomyces cerevisiae]
Length = 266
Score = 520 (240.6 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 92/137 (67%), Positives = 113/137 (82%)
Query: 32 AAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRR 91
AA PR+K F +YRW+PD+ KPH+Q+Y+VDLN CGPMVLDAL+KIK+E DSTLTFRR
Sbjct: 26 AATHTPRLKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRR 85
Query: 92 SCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYK 151
SCREGICGSCAMNI G NTLAC +ID N +K KIYPLPHM+++KDLVPDL+NFY QYK
Sbjct: 86 SCREGICGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYK 145
Query: 152 SIEPYLKKKDESQEGKQ 168
SI+PYL++ ++G +
Sbjct: 146 SIQPYLQRSSFPKDGTE 162
Score = 463 (214.2 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 82/103 (79%), Positives = 91/103 (88%)
Query: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
+ LQSIE+R+KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD T+
Sbjct: 162 EVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATK 221
Query: 229 ERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
R A L + SLYRCHTIMNCTRTCPKGLNPG AIAEIKK +A
Sbjct: 222 TRKAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIKKSLA 264
gnl|PID|d1024622 (AB008569) iron-sulfur subunit of mitochondrial
succinate dehydrogenase [Caenorhabditis elegans]
Length = 297
Score = 927 (428.9 bits), Expect = 4.4e-120, P = 4.4e-120
Identities = 164/245 (66%), Positives = 201/245 (82%)
Query: 35 TAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCR 94
T RIK F IYR++P+ G KP +Q + VDL++CG M+LDALIKIKNEVD TLTFRRSCR
Sbjct: 48 TGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRRSCR 107
Query: 95 EGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIE 154
EGICGSCAMNI G NTLAC +ID++ +K +KIYPLPHM+V+KDLVPD++ FYAQY SI+
Sbjct: 108 EGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQ 167
Query: 155 PYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQ 214
P+++KK G++Q QS+ ER++LDGLYECILCACCSTSCPSYWWN DKYLGPAVLMQ
Sbjct: 168 PWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQ 227
Query: 215 AYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYK 274
AYRW+IDSRDD+ ERL ++ D FS ++CHTIMNCT+TCPK LNP KAI EIK ++ +
Sbjct: 228 AYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFT 287
Query: 275 EKKAS 279
K A+
Sbjct: 288 SKPAA 292
sp|Q09545|DHSB_CAEEL PUTATIVE SUCCINATE DEHYDROGENASE [UBIQUINONE]
IRON-SULFUR PROTEIN PRECURSOR (IP) (IP SUBUNIT OF COMPLEX II)
gnl|PID|e1346688 (Z47809) similar to succinate dehydrogenase
(ubiquinone) iron sulphur protein; cDNA EST EMBL:M89129 comes from
this gene; cDNA EST EMBL:D73492 comes from this gene; cDNA EST
EMBL:D74203 comes from this gene; cDNA EST EMBL:D7...
Length = 298
Score = 927 (428.9 bits), Expect = 4.4e-120, P = 4.4e-120
Identities = 164/245 (66%), Positives = 201/245 (82%)
Query: 35 TAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCR 94
T RIK F IYR++P+ G KP +Q + VDL++CG M+LDALIKIKNEVD TLTFRRSCR
Sbjct: 49 TGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRRSCR 108
Query: 95 EGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIE 154
EGICGSCAMNI G NTLAC +ID++ +K +KIYPLPHM+V+KDLVPD++ FYAQY SI+
Sbjct: 109 EGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQ 168
Query: 155 PYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQ 214
P+++KK G++Q QS+ ER++LDGLYECILCACCSTSCPSYWWN DKYLGPAVLMQ
Sbjct: 169 PWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQ 228
Query: 215 AYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYK 274
AYRW+IDSRDD+ ERL ++ D FS ++CHTIMNCT+TCPK LNP KAI EIK ++ +
Sbjct: 229 AYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFT 288
Query: 275 EKKAS 279
K A+
Sbjct: 289 SKPAA 293
sp|P80480|DHSB_RECAM SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP) gi|2258379 (AF007261) succinate:ubiquinone
oxidoreductase subunit 2 [Reclinomonas americana]
Length = 239
Score = 53 (24.5 bits), Expect = 2.1e-111, Sum P(4) = 2.1e-111
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 38 RIKKFAIYRWDPDK 51
+I F +YRW+PDK
Sbjct: 7 KIMLFKVYRWNPDK 20
Score = 304 (140.6 bits), Expect = 2.1e-111, Sum P(4) = 2.1e-111
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 54 DKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLAC 113
+KPH+ TY VDLN CGPMVLDALIKIKNE DSTLTFRRSCREG+CGSCAMNI+G NTLAC
Sbjct: 22 EKPHISTYSVDLNSCGPMVLDALIKIKNEQDSTLTFRRSCREGVCGSCAMNIDGTNTLAC 81
Query: 114 TRRIDTN 120
+ IDTN
Sbjct: 82 IKSIDTN 88
Score = 168 (77.7 bits), Expect = 2.1e-111, Sum P(4) = 2.1e-111
Identities = 30/40 (75%), Positives = 36/40 (90%)
Query: 123 KVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDE 162
K KIYPLPHM++IKDLVPDLSNFYAQYKSIEP++K ++
Sbjct: 90 KEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKTTEK 129
Score = 450 (208.2 bits), Expect = 2.1e-111, Sum P(4) = 2.1e-111
Identities = 75/101 (74%), Positives = 89/101 (88%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
+++ QS +REKLDGLYEC+LCACCSTSCPSYWWN DKYLGPAVL+QAYRW++DSRD T
Sbjct: 133 KEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGT 192
Query: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKK 268
ERL L+DPF LYRCHTI+NCT+TCPK LNP +AIA+IK+
Sbjct: 193 RERLQYLEDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIKQ 233
gnl|PID|e341165 (Z99091) succinate dehydrogenase [Schizosaccharomyces pombe]
Length = 252
Score = 320 (148.0 bits), Expect = 9.5e-108, Sum P(3) = 9.5e-108
Identities = 59/75 (78%), Positives = 63/75 (84%)
Query: 39 IKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGIC 98
+K F IYRW+P+K KP +Q Y VDL KCGPMVLDALIKIKNE D TLTFRRSCREGIC
Sbjct: 21 LKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTLTFRRSCREGIC 80
Query: 99 GSCAMNINGGNTLAC 113
GSCAMNING NTLAC
Sbjct: 81 GSCAMNINGSNTLAC 95
Score = 151 (69.9 bits), Expect = 9.5e-108, Sum P(3) = 9.5e-108
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 122 NKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 158
NK +KIYPLPH +++KDLVPDL+ FY QYKSIEP+L+
Sbjct: 103 NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQ 139
Score = 443 (204.9 bits), Expect = 9.5e-108, Sum P(3) = 9.5e-108
Identities = 76/105 (72%), Positives = 90/105 (85%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
+++ QS +R KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD T
Sbjct: 147 KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQAT 206
Query: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMAT 272
+RL +Q+ S+YRCHTIMNC RTCPKGLNPG AIA++K +MAT
Sbjct: 207 AKRLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKALMAT 251
gnl|PID|d1013807 (D86574) iron-sulfur subunit of succinate
dehydrogenase [Plasmodium falciparum]
Length = 321
Score = 41 (19.0 bits), Expect = 9.9e-107, Sum P(2) = 9.9e-107
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 38 RIKKFAIYRWDP 49
R KKF+I+R++P
Sbjct: 66 RKKKFSIFRYNP 77
Score = 830 (384.0 bits), Expect = 9.9e-107, Sum P(2) = 9.9e-107
Identities = 139/216 (64%), Positives = 185/216 (85%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACT 114
+P M+T++VD++ CGPMVLD LIKIK+E+DSTL+FRRSCREGICGSCAMNING N LAC
Sbjct: 82 RPQMETFEVDIDNCGPMVLDVLIKIKDEIDSTLSFRRSCREGICGSCAMNINGKNGLACL 141
Query: 115 RRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSI 174
++ + ++++I PLP++YV+KDLVPDL+NFY QYKSI+P+LK+K + ++G++++ QSI
Sbjct: 142 TEVNRDKKEITEIQPLPNLYVMKDLVPDLTNFYNQYKSIDPWLKRKTKKEKGQKEFYQSI 201
Query: 175 EEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKL 234
E+R+KLDGLYECI+CA CSTSCPSYWWN + YLGPA LMQAYRW++DSRD++T+ERL ++
Sbjct: 202 EDRKKLDGLYECIMCASCSTSCPSYWWNPEYYLGPATLMQAYRWIVDSRDEYTKERLMEV 261
Query: 235 QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
D LYRCH IMNCT CPKGL+P KAI ++K ++
Sbjct: 262 NDTMKLYRCHGIMNCTMCCPKGLDPAKAIKDMKNLV 297
sp|Q59662|DHSB_PARDE SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
gi|975319 (U31902) succinate dehydrogenase iron-sulfur protein
subunit [Paracoccus denitrificans]
Length = 259
Score = 60 (27.8 bits), Expect = 6.3e-105, Sum P(4) = 6.3e-105
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 36 APRIKKFAIYRWDPD 50
A +++F IYRWDPD
Sbjct: 24 ATNVRRFNIYRWDPD 38
Score = 275 (127.2 bits), Expect = 6.3e-105, Sum P(4) = 6.3e-105
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 53 GDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLA 112
G+ P + TY VD++KCGPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI+GGN LA
Sbjct: 40 GENPRIDTYFVDMDKCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLA 99
Query: 113 CTRRID 118
C +D
Sbjct: 100 CIYGMD 105
Score = 134 (62.0 bits), Expect = 6.3e-105, Sum P(4) = 6.3e-105
Identities = 23/31 (74%), Positives = 29/31 (93%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 157
IYPLPHM V+KDLVPDL++FYAQ+ S++PYL
Sbjct: 113 IYPLPHMPVVKDLVPDLTHFYAQHASVQPYL 143
Score = 459 (212.4 bits), Expect = 6.3e-105, Sum P(4) = 6.3e-105
Identities = 78/109 (71%), Positives = 92/109 (84%)
Query: 162 ESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMID 221
E+ +++ QSIE+R+KLDGLYEC++CA CST+CPSYWWNGD+YLGPA L+ AYRW+ID
Sbjct: 146 ETPTPDKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHAYRWIID 205
Query: 222 SRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
SRD+ T ERL L+DPF LYRCHTIMNCT TCPKGLNP KAIA IK MM
Sbjct: 206 SRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPKGLNPAKAIASIKHMM 254
gi|3169725 (AF007569) succinate dehydrogenase iron-sulfur protein
subunit [Bradyrhizobium japonicum]
Length = 260
Score = 54 (25.0 bits), Expect = 1.2e-102, Sum P(3) = 1.2e-102
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 34 ATAPRIKKFAIYRWDPD 50
A A +++F +YRW+PD
Sbjct: 22 AGATDVREFRVYRWNPD 38
Score = 381 (176.3 bits), Expect = 1.2e-102, Sum P(3) = 1.2e-102
Identities = 71/106 (66%), Positives = 82/106 (77%)
Query: 53 GDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLA 112
G P + TY VD N CGPMVLD LI IKN +D +LTFRRSCREG+CGSCAMNI+G NTLA
Sbjct: 40 GKNPSVDTYYVDTNDCGPMVLDGLIWIKNNIDPSLTFRRSCREGVCGSCAMNIDGQNTLA 99
Query: 113 CTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 158
CTR + + KI PLPH V+KDLVPDL+NFYAQY S+EP+LK
Sbjct: 100 CTRSMHDVKDGAVKINPLPHQPVVKDLVPDLTNFYAQYASVEPWLK 145
Score = 442 (204.5 bits), Expect = 1.2e-102, Sum P(3) = 1.2e-102
Identities = 77/111 (69%), Positives = 90/111 (81%)
Query: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM 219
K S ++++ QS E+REKLDGLYECILCACCSTSCPSYWWN D+YLGPA L+QA RW+
Sbjct: 145 KTTSPTPQKEWRQSHEDREKLDGLYECILCACCSTSCPSYWWNSDRYLGPAALLQANRWV 204
Query: 220 IDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
DSRD+ T ERL L+DPF LYRCHTIMNC + CPKGLNP +AIAE+K M
Sbjct: 205 SDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACPKGLNPAEAIAELKLKM 255
sp|P21913|DHSB_RAT SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR
PROTEIN (IP) (IP SUBUNIT OF COMPLEX II) pir||B32394 succinate
dehydrogenase (ubiquinone) (EC 1.3.5.1) 27K iron-sulfur protein -
rat (fragment)
Length = 143
Score = 786 (363.6 bits), Expect = 1.9e-100, P = 1.9e-100
Identities = 142/143 (99%), Positives = 143/143 (100%)
Query: 107 GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEG 166
GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQY+SIEPYLKKKDESQEG
Sbjct: 1 GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYRSIEPYLKKKDESQEG 60
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF
Sbjct: 61 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 120
Query: 227 TEERLAKLQDPFSLYRCHTIMNC 249
TEERLAKLQDPFSLYRCHTIMNC
Sbjct: 121 TEERLAKLQDPFSLYRCHTIMNC 143
sp|P32420|DHSB_USTMA SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN PRECURSOR (IP) pir||S26978 succinate dehydrogenase
(ubiquinone) (EC 1.3.5.1) iron-sulfur protein precursor - smut
fungus (Ustilago maydis) gi|5231 (Z11738) succinate dehydrogenase
[Ustilago maydis]
Length = 295
Score = 334 (154.5 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 66/114 (57%), Positives = 80/114 (70%)
Query: 5 VALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVD 64
VA S R +TT + ++ +K+F IYRW+PDK +KP +Q+Y +D
Sbjct: 18 VASSSRVAAFSTTAAARLATPTSDNVGSSGKPQHLKQFKIYRWNPDKPSEKPRLQSYTLD 77
Query: 65 LNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRID 118
LN+ GPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI+G NTLAC RID
Sbjct: 78 LNQTGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRID 131
Score = 484 (223.9 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 86/112 (76%), Positives = 96/112 (85%)
Query: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM 219
K + + ++LQS EER +LDGLYECILCACCSTSCPSYWWN D+YLGPAVLMQAYRWM
Sbjct: 169 KSNNTPSEGEHLQSPEERRRLDGLYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWM 228
Query: 220 IDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
DSRDDF EER KL++ FSLYRCHTIMNC+RTCPK LNPGKAIA+IKK MA
Sbjct: 229 ADSRDDFGEERRQKLENTFSLYRCHTIMNCSRTCPKNLNPGKAIAQIKKDMA 280
Score = 167 (77.3 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 125 SKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK 167
+KIYPLPHMY++KDLVPDL+ FY QY+SIEP+LK + EG+
Sbjct: 136 TKIYPLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNNTPSEGE 178
gnl|PID|d1035634 (D89861) succinate dehydrogenase iron-sulfur protein
[Cyanidioschyzon merolae]
Length = 265
Score = 40 (18.5 bits), Expect = 1.7e-97, Sum P(4) = 1.7e-97
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 42 FAIYRWDP 49
F IYRW+P
Sbjct: 31 FRIYRWNP 38
Score = 241 (111.5 bits), Expect = 1.7e-97, Sum P(4) = 1.7e-97
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 56 PHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTR 115
P + +Y V +N CGP+VLDALIKIKNE DSTLTFRRSCREGICGSCA+NI G NTLAC
Sbjct: 44 PWINSYIVSMNNCGPIVLDALIKIKNEQDSTLTFRRSCREGICGSCAINIIGKNTLACLY 103
Query: 116 RI 117
++
Sbjct: 104 KL 105
Score = 145 (67.1 bits), Expect = 1.7e-97, Sum P(4) = 1.7e-97
Identities = 25/32 (78%), Positives = 31/32 (96%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 158
IYPLPH+YVIKDLVPDL+NFY Q+KSI+P+L+
Sbjct: 114 IYPLPHIYVIKDLVPDLTNFYTQHKSIQPWLQ 145
Score = 448 (207.3 bits), Expect = 1.7e-97, Sum P(4) = 1.7e-97
Identities = 76/113 (67%), Positives = 93/113 (82%)
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
+++++QS +ER LDGLYECILCACCS SCPSYWWNGD+YLGPA+L+QAYRW+IDSRD
Sbjct: 153 QKEFIQSKQERSYLDGLYECILCACCSASCPSYWWNGDRYLGPAILLQAYRWIIDSRDSA 212
Query: 227 TEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEKKAS 279
TE+RL L D + +YRCHTIMNCT+TCPK LNPGKAIA IK ++ K + S
Sbjct: 213 TEKRLGYLNDSYKVYRCHTIMNCTKTCPKHLNPGKAIANIKILLKGEKRESNS 265
pir||S32824 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)
iron-sulfur protein - smut fungus (Ustilago maydis) gi|5217
(X62762) succinate dehydrogenase [Ustilago maydis]
Length = 295
Score = 334 (154.5 bits), Expect = 4.1e-97, Sum P(2) = 4.1e-97
Identities = 66/114 (57%), Positives = 80/114 (70%)
Query: 5 VALSLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVD 64
VA S R +TT + ++ +K+F IYRW+PDK +KP +Q+Y +D
Sbjct: 18 VASSSRVAAFSTTAAARLATPTSDNVGSSGKPQHLKQFKIYRWNPDKPSEKPRLQSYTLD 77
Query: 65 LNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRID 118
LN+ GPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI+G NTLAC RID
Sbjct: 78 LNQTGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRID 131
Score = 473 (218.8 bits), Expect = 4.1e-97, Sum P(2) = 4.1e-97
Identities = 85/112 (75%), Positives = 95/112 (84%)
Query: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM 219
K + + ++LQS EER +LDGLYECILCACCSTSCPSYWWN D+YLGPAVLMQAYRWM
Sbjct: 169 KSNNTPSEGEHLQSPEERRRLDGLYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWM 228
Query: 220 IDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
DSRDDF EER KL++ FSLYRC TIMNC+RTCPK LNPGKAIA+IKK MA
Sbjct: 229 ADSRDDFGEERRQKLENTFSLYRCLTIMNCSRTCPKNLNPGKAIAQIKKDMA 280
Score = 167 (77.3 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 125 SKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK 167
+KIYPLPHMY++KDLVPDL+ FY QY+SIEP+LK + EG+
Sbjct: 136 TKIYPLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNNTPSEGE 178
sp|P48933|DHSB_CYACA SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP) pir||S62756 succinate dehydrogenase (ubiquinone) (EC
1.3.5.1) iron sulfur protein - red alga (Cyanidium caldarium)
mitochondrion gi|758172 (Z48930) subunit of succinate dehydrogenase
(iron sulfur protein) [Cyanidium caldarium]
Length = 262
Score = 37 (17.1 bits), Expect = 9.6e-95, Sum P(4) = 9.6e-95
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 35 TAPRIKKFAIYRWDPDKAGD 54
T +K I+RWD + D
Sbjct: 16 TLSDLKLIKIFRWDSSEKKD 35
Score = 245 (113.3 bits), Expect = 9.6e-95, Sum P(4) = 9.6e-95
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 56 PHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTR 115
P TY V L CGP+VLDALIKIKNE DST++FRRSCREGICGSCA+NING N+LAC +
Sbjct: 36 PWYSTYVVSLKNCGPIVLDALIKIKNECDSTVSFRRSCREGICGSCAININGTNSLACLQ 95
Query: 116 RIDTNLN 122
+++ N
Sbjct: 96 KLNIKNN 102
Score = 138 (63.8 bits), Expect = 9.6e-95, Sum P(4) = 9.6e-95
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 122 NKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQY 170
N + +YPLPH++V+KDLV DL+NFYAQY+ I+P+L+ + K+ Y
Sbjct: 101 NNIIYVYPLPHIFVLKDLVVDLTNFYAQYRLIQPWLQSSLNIKSKKEIY 149
Score = 434 (200.8 bits), Expect = 9.6e-95, Sum P(4) = 9.6e-95
Identities = 75/106 (70%), Positives = 87/106 (82%)
Query: 165 EGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRD 224
+ K++ QS ++R LDGLYECILCACCS SCPSYWWN DKYLGPAVL+QAYRW++DSRD
Sbjct: 143 KSKKEIYQSKQDRLYLDGLYECILCACCSASCPSYWWNHDKYLGPAVLLQAYRWIVDSRD 202
Query: 225 DFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
D T RL L+D + LYRCHTIMNCT+TCPK LNPGK IA IKK +
Sbjct: 203 DNTLSRLLSLKDSYKLYRCHTIMNCTKTCPKHLNPGKVIASIKKRL 248
gi|3851608 (AF095935) succinate dehydrogenase Ip subunit [Bos taurus]
Length = 139
Score = 741 (342.8 bits), Expect = 3.5e-94, P = 3.5e-94
Identities = 135/139 (97%), Positives = 138/139 (99%)
Query: 104 NINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES 163
NINGGNTLACTRRIDTNL+KVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES
Sbjct: 1 NINGGNTLACTRRIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES 60
Query: 164 QEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR 223
Q GK+QYLQSIE+REKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR
Sbjct: 61 QGGKEQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR 120
Query: 224 DDFTEERLAKLQDPFSLYR 242
DDFTEERLAKLQDPFSLYR
Sbjct: 121 DDFTEERLAKLQDPFSLYR 139
gi|3851610 (AF095936) succinate dehydrogenase Ip subunit [Mus musculus]
Length = 139
Score = 739 (341.9 bits), Expect = 6.7e-94, P = 6.7e-94
Identities = 134/139 (96%), Positives = 138/139 (99%)
Query: 104 NINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES 163
N NGGNTLACTRRIDT+L+KVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES
Sbjct: 1 NFNGGNTLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES 60
Query: 164 QEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR 223
QEGKQQYLQSIE+REKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR
Sbjct: 61 QEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSR 120
Query: 224 DDFTEERLAKLQDPFSLYR 242
DDFTEERLAKLQDPFS+YR
Sbjct: 121 DDFTEERLAKLQDPFSVYR 139
pir||C32394 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) 27K
iron-sulfur protein - fruit fly (Drosophila melanogaster) (fragment)
Length = 142
Score = 734 (339.6 bits), Expect = 3.3e-93, P = 3.3e-93
Identities = 133/142 (93%), Positives = 135/142 (95%)
Query: 108 GNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK 167
G + IDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK
Sbjct: 1 GGNTLASPEIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK 60
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
QQYL+SIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT
Sbjct: 61 QQYLESIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 120
Query: 228 EERLAKLQDPFSLYRCHTIMNC 249
EERLAKLQDPFSLYRCHTIMNC
Sbjct: 121 EERLAKLQDPFSLYRCHTIMNC 142
sp|P48932|DHSB_CHOCR SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP) pir||S59114 succinate dehydrogenase (EC 1.3.99.1)
iron-sulfur protein - red alga (Chondrus crispus) mitochondrion
(SGC3) gnl|PID|e133791 (Z47547) succinate dehydrogenase,
iron-sulfur subunit [Chondrus crispus]
Length = 250
Score = 41 (19.0 bits), Expect = 4.0e-92, Sum P(4) = 4.0e-92
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 35 TAPRIKKFAIYRWDPD 50
++P K IYRW+P+
Sbjct: 16 SSPYQKFIRIYRWNPN 31
Score = 235 (108.7 bits), Expect = 4.0e-92, Sum P(4) = 4.0e-92
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 56 PHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTR 115
P + + N CGPM+LDALI+IKN DS+LTFRRSCREGICGSC+MNI+G N+LAC R
Sbjct: 36 PWFSIFPISTNNCGPMILDALIQIKNIQDSSLTFRRSCREGICGSCSMNIDGTNSLACLR 95
Query: 116 RIDTNLNKVS 125
++T N ++
Sbjct: 96 SLNTKSNFIT 105
Score = 148 (68.5 bits), Expect = 4.0e-92, Sum P(4) = 4.0e-92
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKK 160
IYPLPH Y+IKDLVPDLSNFYAQYK I+P+L K
Sbjct: 106 IYPLPHTYIIKDLVPDLSNFYAQYKLIKPWLINK 139
Score = 411 (190.1 bits), Expect = 4.0e-92, Sum P(4) = 4.0e-92
Identities = 71/100 (71%), Positives = 84/100 (84%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
++ LQS +R +LDGLYECILCACCS SCPSYWWN DKYLGPA+L+QAYRW++DSRD+ T
Sbjct: 145 KENLQSKIDRLELDGLYECILCACCSASCPSYWWNQDKYLGPAILLQAYRWIVDSRDNST 204
Query: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 267
E RL L + L+RCHTIMNC++TCPK LNPGKAIA IK
Sbjct: 205 ENRLNFLNNKMRLFRCHTIMNCSKTCPKSLNPGKAIASIK 244
gi|4106930 (AF114794) succinate:cytochrome c oxidoreductase subunit 2
[Porphyra purpurea]
Length = 249
Score = 37 (17.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 39 IKKFAIYRWDPDKAGD 54
+K IYRW P +
Sbjct: 20 LKFIRIYRWTPSNQAE 35
Score = 231 (106.9 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 61 YKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN 120
+ + + CGPM+LDALIKIK+E DS+L FRRSCREGICGSC+MNI+G NTLAC + I TN
Sbjct: 41 HPIHTSNCGPMILDALIKIKDEQDSSLAFRRSCREGICGSCSMNIDGINTLACLKPIKTN 100
Query: 121 LNKVS 125
N ++
Sbjct: 101 ANIIT 105
Score = 145 (67.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 25/31 (80%), Positives = 30/31 (96%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 157
IYPLPHMY+IKDLVPDLSNF++QYK I+P+L
Sbjct: 106 IYPLPHMYIIKDLVPDLSNFFSQYKYIKPWL 136
Score = 411 (190.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 70/101 (69%), Positives = 83/101 (82%)
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
K +YLQS ++R +L+G+YECILCACCS SCPSYWWN DKYLGPA+L+QAYRW+ DSRD
Sbjct: 143 KSEYLQSEKDRSELNGIYECILCACCSASCPSYWWNHDKYLGPAILLQAYRWLADSRDTN 202
Query: 227 TEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 267
+ERL L L++CHTIMNC+RTCPK LNPGKAIA IK
Sbjct: 203 AKERLKLLGGKSKLFKCHTIMNCSRTCPKSLNPGKAIASIK 243
sp|P80477|DHSB_PORPU SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP)
Length = 239
Score = 37 (17.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 39 IKKFAIYRWDPDKAGD 54
+K IYRW P +
Sbjct: 10 LKFIRIYRWTPSNQAE 25
Score = 231 (106.9 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 61 YKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN 120
+ + + CGPM+LDALIKIK+E DS+L FRRSCREGICGSC+MNI+G NTLAC + I TN
Sbjct: 31 HPIHTSNCGPMILDALIKIKDEQDSSLAFRRSCREGICGSCSMNIDGINTLACLKPIKTN 90
Query: 121 LNKVS 125
N ++
Sbjct: 91 ANIIT 95
Score = 145 (67.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 25/31 (80%), Positives = 30/31 (96%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 157
IYPLPHMY+IKDLVPDLSNF++QYK I+P+L
Sbjct: 96 IYPLPHMYIIKDLVPDLSNFFSQYKYIKPWL 126
Score = 411 (190.1 bits), Expect = 1.3e-90, Sum P(4) = 1.3e-90
Identities = 70/101 (69%), Positives = 83/101 (82%)
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
K +YLQS ++R +L+G+YECILCACCS SCPSYWWN DKYLGPA+L+QAYRW+ DSRD
Sbjct: 133 KSEYLQSEKDRSELNGIYECILCACCSASCPSYWWNHDKYLGPAILLQAYRWLADSRDTN 192
Query: 227 TEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 267
+ERL L L++CHTIMNC+RTCPK LNPGKAIA IK
Sbjct: 193 AKERLKLLGGKSKLFKCHTIMNCSRTCPKSLNPGKAIASIK 233
gnl|PID|e1342358 (AJ235270) SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
(sdhB) [Rickettsia prowazekii]
Length = 261
Score = 41 (19.0 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 40 KKFAIYRWDPD 50
+K +YR+DPD
Sbjct: 28 RKVKVYRYDPD 38
Score = 261 (120.7 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 47/65 (72%), Positives = 58/65 (89%)
Query: 54 DKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLAC 113
+ P + ++++DL+K GPMVLDALIKIKNE+DSTLTFRRSCREGICGSCAMNI+G NTLAC
Sbjct: 41 ENPTIDSFEIDLSKTGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLAC 100
Query: 114 TRRID 118
+ I+
Sbjct: 101 IKPIE 105
Score = 481 (222.5 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 82/113 (72%), Positives = 93/113 (82%)
Query: 159 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 218
K D + LQSI++REKLDGLYECILCACCSTSCPSYWWNGDKYLGPA+L+QAYRW
Sbjct: 144 KNDSPAPSNSERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRW 203
Query: 219 MIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
+ DSRDD T RL L+DPF LYRCHTIMNCT+TCPKGLNP KAI +K ++A
Sbjct: 204 IADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGRVKNLIA 256
Score = 153 (70.8 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 126 KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQ 169
KIYPLPHM V+KDLVPD+S+FYAQY+SIEP+LK + ++
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKNDSPAPSNSER 155
pir||A56660 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)
iron-sulfur protein - Caenorhabditis elegans (fragment) bbs|120495
(S50380) succinate-ubiquinone oxidoreductase complex II iron-sulfur
subunit, complex II Ip subunit [Caenorhabditis elegans, var.
Bristol, Peptide Partial, 161 aa] [Caenorhabditis elegans]
Length = 161
Score = 656 (303.5 bits), Expect = 2.4e-82, P = 2.4e-82
Identities = 111/161 (68%), Positives = 137/161 (85%)
Query: 93 CREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKS 152
CREG+CGSCAMNI G NTLAC +ID++ +K +KIYPLPHM+V+KDLVPD++ FYAQY S
Sbjct: 1 CREGMCGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYAS 60
Query: 153 IEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVL 212
I+P+++KK G++Q QS+ ER++LDGLYECILCACCSTSCPSYWWN DKYLGPAVL
Sbjct: 61 IQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVL 120
Query: 213 MQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTC 253
MQAYRW+IDSRDD+ ERL ++ D FS ++CHT+MNCTR C
Sbjct: 121 MQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTMMNCTRIC 161
gnl|PID|e325438 (Y13760) succinate dehydrogenase putative iron sulphur
subunit [Shewanella putrefaciens]
Length = 235
Score = 40 (18.5 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 42 FAIYRWDPD 50
FA+YR++PD
Sbjct: 5 FALYRYNPD 13
Score = 240 (111.0 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 49/109 (44%), Positives = 70/109 (64%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACT 114
KP+M+ Y +++ M++ + E DSTL FRRSCREG+CGS +N+NG N LAC
Sbjct: 17 KPYMKDYTLEVPDGTDMMVLDALIKLKEQDSTLAFRRSCREGVCGSDGVNMNGKNGLACI 76
Query: 115 RRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDES 163
+ T K +I PLP M V++DLV DL+ FY QY+ I+PYL +++
Sbjct: 77 TPLSTFKGKKIEIRPLPGMPVVRDLVVDLTQFYKQYEKIKPYLINDEQA 125
Score = 402 (186.0 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 68/110 (61%), Positives = 88/110 (80%)
Query: 161 DESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMI 220
++ Q +++LQS EER LDGLYECI+CACCST+CPS+WWN DK++GP+ L+ AYR++I
Sbjct: 121 NDEQAPAREHLQSPEERAHLDGLYECIMCACCSTACPSFWWNPDKFIGPSGLLHAYRFLI 180
Query: 221 DSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
DSRD TEERL++L D +S++RCH IMNC CPKGLNP KAI IK M+
Sbjct: 181 DSRDTATEERLSELDDAYSVFRCHGIMNCVDVCPKGLNPTKAIGHIKSML 230
gnl|PID|d1032168 (AB015757) fumarate reductase iron-sulpher protein
subunit [Rhodoferax fermentans]
Length = 234
Score = 37 (17.1 bits), Expect = 9.4e-72, Sum P(5) = 9.4e-72
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 40 KKFAIYRWDPD 50
+ F IYR++PD
Sbjct: 4 RTFNIYRYNPD 14
Score = 72 (33.3 bits), Expect = 9.4e-72, Sum P(5) = 9.4e-72
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIK 80
KP+MQT +V+L+ M+LDAL+K+K
Sbjct: 18 KPYMQTIEVELDGSERMLLDALVKLK 43
Score = 136 (62.9 bits), Expect = 9.4e-72, Sum P(5) = 9.4e-72
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 82 EVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDT 119
E+D TL++RRSCREGICGS AMNING N LAC + T
Sbjct: 44 EIDPTLSYRRSCREGICGSDAMNINGKNGLACLINLRT 81
Score = 88 (40.7 bits), Expect = 9.4e-72, Sum P(5) = 9.4e-72
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 129 PLPHMYVIKDLVPDLSNFYAQYKSIEPYL 157
PLP + VI+DL+ D++ F+ QY SI+PYL
Sbjct: 90 PLPGLPVIRDLIVDMTLFFQQYHSIKPYL 118
Score = 386 (178.6 bits), Expect = 9.4e-72, Sum P(5) = 9.4e-72
Identities = 68/110 (61%), Positives = 88/110 (80%)
Query: 161 DESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMI 220
++++ +++ LQS EERE L+GLYECILCA CSTSCP YWWN DK++GPA L+QAYR++
Sbjct: 120 NDTRPPEKERLQSPEEREVLNGLYECILCASCSTSCPVYWWNPDKFVGPAGLLQAYRFIA 179
Query: 221 DSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
DSRD+ T ERL L+DP+ L+RC TIMNC CPKGLNP AI +IK++M
Sbjct: 180 DSRDEATSERLDNLEDPYRLFRCTTIMNCVDVCPKGLNPTAAIGKIKELM 229
sp|P07014|DHSB_ECOLI SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
pir||DEECSI succinate dehydrogenase (EC 1.3.99.1) iron-sulfur
protein - Escherichia coli gi|42928 (X01070) suc. dehydrogenase
iron- sulphur protein subunit; pid:e [Escherichia coli] gi|146200
(J01619) succinate dehydrogenase small subunit [Escherichia coli]
gnl|PID|d1036377 (D90711) Succinate dehydrogenase (EC 1.3.99.1)
iron-sulfur protein [Escherichia coli] gi|1786943 (AE000175)
succinate dehydrogenase, iron sulfur protein [Escherichia coli]
Length = 238
Score = 40 (18.5 bits), Expect = 7.6e-71, Sum P(4) = 7.6e-71
Identities = 6/10 (60%), Positives = 10/10 (100%)
Query: 41 KFAIYRWDPD 50
+F+IYR++PD
Sbjct: 4 EFSIYRYNPD 13
Score = 140 (64.8 bits), Expect = 7.6e-71, Sum P(4) = 7.6e-71
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 54 DKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLAC 113
D P MQ Y ++ ++ M+L + E D +L+FRRSCREG+CGS +N+NG N LAC
Sbjct: 16 DAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLAC 75
Score = 102 (47.2 bits), Expect = 7.6e-71, Sum P(4) = 7.6e-71
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQ 168
I PLP + VI+DLV D+ FYAQY+ I+PYL ++ ++
Sbjct: 91 IRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPARE 132
Score = 398 (184.1 bits), Expect = 7.6e-71, Sum P(4) = 7.6e-71
Identities = 68/103 (66%), Positives = 84/103 (81%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
+++LQ E+REKLDGLYECILCACCSTSCPS+WWN DK++GPA L+ AYR++IDSRD T
Sbjct: 131 REHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTET 190
Query: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
+ RL L D FS++RCH+IMNC CPKGLNP +AI IK M+
Sbjct: 191 DSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSML 233
sp|P21914|DHSB_DROME SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN PRECURSOR (IP) gi|508849 (L27705) succinate dehydrogenase
iron-protein subunit [Drosophila melanogaster]
Length = 297
Score = 553 (255.8 bits), Expect = 5.4e-68, P = 5.4e-68
Identities = 101/160 (63%), Positives = 125/160 (78%)
Query: 8 SLRRRLPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNK 67
SL R + Q + AQ A P+IKKF IYRW+PD AG+KP+MQTY+VDL +
Sbjct: 15 SLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRE 74
Query: 68 CGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKI 127
CGPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N +K K+
Sbjct: 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKV 134
Query: 128 YPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGK 167
YPLPHMYV++DLVPD++NFY QY++I+P+L++K+E+ E K
Sbjct: 135 YPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKK 174
Score = 523 (242.0 bits), Expect = 8.1e-64, P = 8.1e-64
Identities = 91/121 (75%), Positives = 106/121 (87%)
Query: 158 KKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYR 217
K + ++GK QYLQS+E+R KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 167 KNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYR 226
Query: 218 WMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEKK 277
W+IDSRD+ + ERL KL+DPFS+YRCHTIMNCTRTCPKGLNPG+AIAEIKK+++ K
Sbjct: 227 WIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKP 286
Query: 278 A 278
A
Sbjct: 287 A 287
gi|474053 (X75827) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 180
Score = 546 (252.6 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 104/170 (61%), Positives = 130/170 (76%)
Query: 19 GGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIK 78
G L ASR T+ T R+K F IYRW+PD KP ++ Y VDL+ CG MVLDAL K
Sbjct: 11 GEVVLYASRALSTSKPTGKRVKTFEIYRWNPDTPSVKPSLKKYDVDLDDCGSMVLDALNK 70
Query: 79 IKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKD 138
IK+E D TLTFRRSCREGICGSCAMNI+G NTLAC ++I+T+ +K +KI+PLPHMYV+KD
Sbjct: 71 IKDEQDPTLTFRRSCREGICGSCAMNIDGENTLACIKKINTDTSKSTKIHPLPHMYVMKD 130
Query: 139 LVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECIL 188
LVPDL+ F+ QY+SI+P+L+KK + G +Q QS +ERE+LD LYECIL
Sbjct: 131 LVPDLTLFFEQYRSIQPWLQKKTPLKLGDKQMFQSEKERERLDMLYECIL 180
gi|474063 (X75829) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 136
Score = 537 (248.4 bits), Expect = 9.1e-66, P = 9.1e-66
Identities = 91/136 (66%), Positives = 116/136 (85%)
Query: 107 GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEG 166
G N LACT +IDT+L+K +KIYPLPHMYVIKDLVPDLS F+ QY+SI+P+L+K ++ G
Sbjct: 1 GENNLACTLKIDTDLSKTTKIYPLPHMYVIKDLVPDLSLFFEQYRSIQPWLQKNEKLTLG 60
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
++Q QS +ER ++DGLYECILCACCS+SCPSYWWN DKYLGPAVLMQAYRW++DSRDD+
Sbjct: 61 EKQMFQSADERARIDGLYECILCACCSSSCPSYWWNADKYLGPAVLMQAYRWIVDSRDDY 120
Query: 227 TEERLAKLQDPFSLYR 242
ERLA++ D +S ++
Sbjct: 121 ARERLARIHDAYSAFK 136
sp|P51053|DHSB_COXBU SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
gi|495756 (L33409) succinate dehydrogenase [Coxiella burnetii]
Length = 235
Score = 129 (59.7 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACT 114
KP+MQ +++D++ +L ++ E + RRSC EG+CGS MNING N LAC
Sbjct: 15 KPYMQDFELDVSAIQGKMLLNALEALREKHPDIGLRRSCAEGVCGSDGMNINGKNALACV 74
Query: 115 RRI 117
++
Sbjct: 75 TQL 77
Score = 102 (47.2 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE 165
+ PLP +I+DL+ D+ FYAQYK ++PYL E+ +
Sbjct: 86 VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYLLNDQEAPQ 124
Score = 375 (173.5 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 64/110 (58%), Positives = 86/110 (78%)
Query: 161 DESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMI 220
++ + +++ LQS EER KLDGLYECILCACCS+SCPSYWWN DK++GPA L+ +YR++
Sbjct: 118 NDQEAPQKERLQSPEERAKLDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIA 177
Query: 221 DSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
DSRD +ERL ++DP+S++RC TIM+C CPK LNP KAI +I+ M
Sbjct: 178 DSRDSKEKERLDAMKDPYSVFRCRTIMDCATVCPKNLNPAKAIRKIRTEM 227
pir||S42873 succinate dehydrogenase (EC 1.3.99.1) - Coxiella burnetii
gi|457724 (X77919) putative succinate dehydrogenase small subunit
[Coxiella burnetii]
Length = 243
Score = 33 (15.3 bits), Expect = 3.1e-65, Sum P(4) = 3.1e-65
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 38 RIKKFAIYRWDPD 50
RI F+I R++P+
Sbjct: 7 RIMTFSIMRFNPE 19
Score = 129 (59.7 bits), Expect = 3.1e-65, Sum P(4) = 3.1e-65
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACT 114
KP+MQ +++D++ +L ++ E + RRSC EG+CGS MNING N LAC
Sbjct: 23 KPYMQDFELDVSAIQGKMLLNALEALREKHPDIGLRRSCAEGVCGSDGMNINGKNALACV 82
Query: 115 RRI 117
++
Sbjct: 83 TQL 85
Score = 102 (47.2 bits), Expect = 3.1e-65, Sum P(4) = 3.1e-65
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 127 IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE 165
+ PLP +I+DL+ D+ FYAQYK ++PYL E+ +
Sbjct: 94 VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYLLNDQEAPQ 132
Score = 375 (173.5 bits), Expect = 3.1e-65, Sum P(4) = 3.1e-65
Identities = 64/110 (58%), Positives = 86/110 (78%)
Query: 161 DESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMI 220
++ + +++ LQS EER KLDGLYECILCACCS+SCPSYWWN DK++GPA L+ +YR++
Sbjct: 126 NDQEAPQKERLQSPEERAKLDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIA 185
Query: 221 DSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 270
DSRD +ERL ++DP+S++RC TIM+C CPK LNP KAI +I+ M
Sbjct: 186 DSRDSKEKERLDAMKDPYSVFRCRTIMDCATVCPKNLNPAKAIRKIRTEM 235
gi|474051 (X75826) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 136
Score = 517 (239.2 bits), Expect = 5.5e-63, P = 5.5e-63
Identities = 90/136 (66%), Positives = 116/136 (85%)
Query: 107 GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEG 166
G NTLAC ++I+T+ +K +KI+PLPHMYV+KDLVPDL+ F+ QY+SI+P+L+KK + G
Sbjct: 1 GENTLACIKKINTDTSKSTKIHPLPHMYVMKDLVPDLTLFFEQYRSIQPWLQKKTPLKLG 60
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
+Q QS +ERE+LD LYECILCACCS+SCPSYWWN DKYLGPAVLMQAYRW+IDSRDD+
Sbjct: 61 DKQMFQSEKERERLDMLYECILCACCSSSCPSYWWNADKYLGPAVLMQAYRWIIDSRDDY 120
Query: 227 TEERLAKLQDPFSLYR 242
+ERLA++ D FS ++
Sbjct: 121 PKERLARMHDAFSAFK 136
gi|474057 (X75830) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 136
Score = 510 (235.9 bits), Expect = 5.2e-62, P = 5.2e-62
Identities = 89/136 (65%), Positives = 115/136 (84%)
Query: 107 GGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEG 166
G NTLAC ++I+T+ +K +KI+PLPHMYV+KDLVPDL+ F+ QY+SI+P+L+KK + G
Sbjct: 1 GENTLACIKKINTDTSKSTKIHPLPHMYVMKDLVPDLTLFFEQYRSIQPWLQKKTPLKLG 60
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
+Q QS +ERE+LD LYECILCACCS+SCPSYWWN DKYLGPAV MQAYRW+IDSRDD+
Sbjct: 61 DKQMFQSEKERERLDMLYECILCACCSSSCPSYWWNADKYLGPAVPMQAYRWIIDSRDDY 120
Query: 227 TEERLAKLQDPFSLYR 242
+ERLA++ D FS ++
Sbjct: 121 PKERLARMHDAFSAFK 136
gnl|PID|e1312401 (AJ231124) z62f [Vibrio cholerae]
Length = 172
Score = 180 (83.3 bits), Expect = 2.8e-61, Sum P(2) = 2.8e-61
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 84 DSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDL 143
D ++ FRRSCREG+CGS +N+NG N LAC + I PLP + V++DL+ D+
Sbjct: 1 DPSIAFRRSCREGVCGSDGLNMNGKNGLACITPLSALKGDKIVIRPLPGLPVVRDLIVDM 60
Query: 144 SNFYAQYKSIEPYLKKKD 161
+ FY Y ++P+L D
Sbjct: 61 TQFYDNYAKVKPFLIADD 78
Score = 363 (167.9 bits), Expect = 2.8e-61, Sum P(2) = 2.8e-61
Identities = 60/96 (62%), Positives = 76/96 (79%)
Query: 161 DESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMI 220
D++ ++ LQS EER LDGLYECI+CACC+TSCPS+WWN DK++GPA L+ AYRW+I
Sbjct: 77 DDALPPSRENLQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWLI 136
Query: 221 DSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKG 256
DSRD T+ERL+ L D F+++RCH IMNC CPKG
Sbjct: 137 DSRDTATDERLSNLDDAFNVFRCHGIMNCVSVCPKG 172
gnl|PID|d1023371 (AB007361) iron-sulfur protein subunit [Pleurotus
ostreatus] gnl|PID|d1023372 (AB007362) iron-sulfur protein subunit
[Pleurotus ostreatus] gnl|PID|d1023373 (AB007363) iron-sulfur
protein subunit [Pleurotus ostreatus] gnl|PID|d1024996 (AB009845)
iron-sulfur protein subunit [Pleurotus ostreatus]
Length = 268
Score = 498 (230.4 bits), Expect = 2.5e-60, P = 2.5e-60
Identities = 91/151 (60%), Positives = 115/151 (76%)
Query: 40 KKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 99
K+F IYRW+PD+ KPH+Q+Y +DLN+ GPM+LDALIKIKNE+D TLTFRRSCREGICG
Sbjct: 38 KEFKIYRWNPDEPAKKPHLQSYTIDLNQTGPMILDALIKIKNEIDPTLTFRRSCREGICG 97
Query: 100 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
SCAMNI+G NTLAC RID N +K SKIYPLPHMY++KDLVPDL+ FY QYKSI+PYL+
Sbjct: 98 SCAMNIDGQNTLACLCRIDRNASKDSKIYPLPHMYIVKDLVPDLTLFYKQYKSIKPYLQN 157
Query: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCA 190
+ + Q + ++ + + C C+
Sbjct: 158 DNVPEREHLQSPEDRKKLDGMYECILCACCS 188
Score = 427 (197.5 bits), Expect = 1.9e-50, P = 1.9e-50
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 167 KQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDF 226
++++LQS E+R+KLDG+YECILCACCSTSCPSYWWN D+YLGPA LM AYRW+ DSRD +
Sbjct: 162 EREHLQSPEDRKKLDGMYECILCACCSTSCPSYWWNQDEYLGPAALMAAYRWIADSRDTY 221
Query: 227 TEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMAT 272
+R Q+ SL+RCHTI NC+RTCPKGLNP KAIAEIK +AT
Sbjct: 222 GAQRKEHFQNELSLFRCHTIFNCSRTCPKGLNPAKAIAEIKLALAT 267
gnl|PID|e1217194 (Y15942) succinate dehydrogenase iron-sulfur subunit
[Agaricus bisporus]
Length = 245
Score = 491 (227.2 bits), Expect = 2.3e-59, P = 2.3e-59
Identities = 90/151 (59%), Positives = 115/151 (76%)
Query: 40 KKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICG 99
K+F IYRW+PD+ KP +Q+YK+DLN+CGPM+LDALIKIKNE+D TLTFRRSCREGICG
Sbjct: 15 KEFKIYRWNPDEPSKKPTLQSYKIDLNQCGPMILDALIKIKNEMDPTLTFRRSCREGICG 74
Query: 100 SCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
SCAMNI+G NTLAC RID +K +K+YPLPHMYV+KDLVPDL+ FY QYKSI+P+L+
Sbjct: 75 SCAMNIDGQNTLACLCRIDREGSKDTKVYPLPHMYVVKDLVPDLTLFYKQYKSIQPWLQN 134
Query: 160 KDESQEGKQQYLQSIEEREKLDGLYECILCA 190
+ Q ++ ++ + L C C+
Sbjct: 135 DNPPAHEHLQSIEDRKKLDGLYECILCACCS 165
Score = 432 (199.9 bits), Expect = 3.8e-51, P = 3.8e-51
Identities = 76/104 (73%), Positives = 87/104 (83%)
Query: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
++LQSIE+R+KLDGLYECILCACCSTSCPSYWWN D+YLGPA LMQAYRW+ DSRD
Sbjct: 141 EHLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQDEYLGPATLMQAYRWIADSRDTHGA 200
Query: 229 ERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMAT 272
+R LQ+ SLYRCHTI NC+RTCPKGLNP AIA+IK +AT
Sbjct: 201 QRKEVLQNEMSLYRCHTIFNCSRTCPKGLNPAAAIAKIKLELAT 244
sp|O42772|DHSB_MYCGR SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN PRECURSOR (IP) gi|2801670 (AF042062) succinate
dehydrogenase iron-sulphur protein [Mycosphaerella graminicola]
Length = 297
Score = 485 (224.4 bits), Expect = 1.6e-58, P = 1.6e-58
Identities = 88/131 (67%), Positives = 107/131 (81%)
Query: 38 RIKKFAIYRWDPDKAGDKPHMQTYKVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGI 97
+ K F IYRW+PD+ DKP MQ+Y +DLNK GPM+LDALI+IKNEVD TLTFRRSCREGI
Sbjct: 62 KTKTFHIYRWNPDQPTDKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGI 121
Query: 98 CGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 157
CGSCAMNI+G NTLAC RI T+ K ++IYPLPH YV+KDLVPD++ FY QYKSI+PYL
Sbjct: 122 CGSCAMNIDGVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYL 181
Query: 158 KKKDESQEGKQ 168
++ +GK+
Sbjct: 182 QRDTAPPDGKE 192
Score = 428 (198.0 bits), Expect = 1.4e-50, P = 1.4e-50
Identities = 74/113 (65%), Positives = 92/113 (81%)
Query: 159 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 218
++D + ++ QS+ +R+KLDGLYECILCACCSTSCPSYWWN ++YLGPAVL+Q+YRW
Sbjct: 182 QRDTAPPDGKENRQSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRW 241
Query: 219 MIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
+ DSRD+ T +R L + SLYRCHTI+NC+RTCPKGLNP AIAEIKK MA
Sbjct: 242 INDSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSMA 294
gi|474043 (X75822) succinate dehydrogenase subunit b [Haemonchus contortus]
Length = 129
Score = 477 (220.7 bits), Expect = 2.1e-57, P = 2.1e-57
Identities = 82/121 (67%), Positives = 100/121 (82%)
Query: 156 YLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 215
+L+KK + G +Q QS +ERE+LD LYECILCACCS+SCPSYWWN DKYLGPAVLMQA
Sbjct: 1 WLQKKTPLKLGDKQMFQSEKERERLDMLYECILCACCSSSCPSYWWNADKYLGPAVLMQA 60
Query: 216 YRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKE 275
YRW+IDSRDD+ +ERLA++ D FS ++CHTIMNCT+TCPK LNP KAI EIK ++ +K
Sbjct: 61 YRWIIDSRDDYPKERLARMHDAFSAFKCHTIMNCTKTCPKNLNPAKAIGEIKTLLTGFKS 120
Query: 276 K 276
K
Sbjct: 121 K 121
sp|P21911|DHSB_SCHPO SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP) pir||E32394 succinate dehydrogenase (ubiquinone) (EC
1.3.5.1) 27K iron-sulfur protein - fission yeast
(Schizosaccharomyces pombe) (fragment)
Length = 140
Score = 34 (15.7 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 107 GGNTLAC 113
G NTLAC
Sbjct: 1 GSNTLAC 7
Score = 151 (69.9 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 122 NKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 158
NK +KIYPLPH +++KDLVPDL+ FY QYKSIEP+L+
Sbjct: 15 NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQ 51
Score = 349 (161.5 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
+++ QS +R KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD T
Sbjct: 59 KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQAT 118
Query: 228 EERLAKLQDPFSLYRCHTIMNC 249
+RL +Q+ S+YRCHTIMNC
Sbjct: 119 AKRLDVMQNSMSVYRCHTIMNC 140
sp|P21915|DHSB_ARATH SUCCINATE DEHYDROGENASE (UBIQUINONE) IRON-SULFUR
PROTEIN (IP) pir||D32394 succinate dehydrogenase (ubiquinone) (EC
1.3.5.1) 27K iron-sulfur protein - Arabidopsis thaliana (fragment)
Length = 140
Score = 34 (15.7 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 107 GGNTLAC 113
G NTLAC
Sbjct: 1 GSNTLAC 7
Score = 147 (68.0 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 122 NKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 158
NK +KIYPLPH +++KDLVPDL+ FY +YKSIEP+L+
Sbjct: 15 NKPTKIYPLPHCFIVKDLVPDLTYFYNEYKSIEPWLQ 51
Score = 350 (161.9 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
+++ QS +R KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD T
Sbjct: 59 KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWLIDSRDQAT 118
Query: 228 EERLAKLQDPFSLYRCHTIMNC 249
+RL +Q+ S+YRCHTIMNC
Sbjct: 119 AKRLDVMQNSMSVYRCHTIMNC 140
gi|150368 (J03844) ORF2 [Neisseria gonorrhoeae]
Length = 241
Score = 37 (17.1 bits), Expect = 6.3e-53, Sum P(5) = 6.3e-53
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 42 FAIYRWDPD 50
F IYR++PD
Sbjct: 13 FEIYRYNPD 21
Score = 67 (31.0 bits), Expect = 6.3e-53, Sum P(5) = 6.3e-53
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 55 KPHMQTYKVDLNKCGPMVLDALIKIKNEVDS 85
KP+MQ Y+++L +LDAL+++K + D+
Sbjct: 25 KPYMQRYELELEPTDVKLLDALVRLKAQDDT 55
Score = 122 (56.4 bits), Expect = 6.3e-53, Sum P(5) = 6.3e-53
Identities = 23/30 (76%), Positives = 24/30 (80%)
Query: 84 DSTLTFRRSCREGICGSCAMNINGGNTLAC 113
D TL+FRRSCREGICG MNING N LAC
Sbjct: 53 DDTLSFRRSCREGICGPDGMNINGKNGLAC 82
Score = 100 (46.3 bits), Expect = 6.3e-53, Sum P(5) = 6.3e-53
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 120 NLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEERE 178
+L + KI PLP + VI+DL+ D++ F+ QY S++PY+ + K++ E +E
Sbjct: 88 SLKQPVKIRPLPGLPVIRDLIVDMTQFFKQYHSVKPYVVNDNPIGADKERLQTQEERKE 146
Score = 255 (118.0 bits), Expect = 6.3e-53, Sum P(5) = 6.3e-53
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 198 SYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGL 257
S+WWN DK++GP+ L+ AYR++ DSRD T ERL L DP+ L+RCHTIMNC CPK L
Sbjct: 164 SFWWNPDKFVGPSGLLNAYRFIADSRDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHL 223
Query: 258 NPGKAIAEIKKMM 270
NP +AI +IK++M
Sbjct: 224 NPTRAIGKIKEIM 236
Score = 87 (40.2 bits), Expect = 0.0042, P = 0.0042
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 168 QQYLQSIEEREKLDGLYECILCA 190
++ LQ+ EER++LDGLYECILCA
Sbjct: 135 KERLQTQEERKELDGLYECILCA 157
gi|474049 (X75825) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 97
Score = 391 (180.9 bits), Expect = 2.0e-45, P = 2.0e-45
Identities = 67/97 (69%), Positives = 84/97 (86%)
Query: 116 RIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
+IDT+L+K +KIYPLPHMYVIKDLVPDLS F+ QY+SI+P+L+K ++ G++Q QS +
Sbjct: 1 KIDTDLSKTTKIYPLPHMYVIKDLVPDLSLFFEQYRSIQPWLQKNEKLTLGEKQMFQSAD 60
Query: 176 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVL 212
ER ++DG YECILCACCS+SCPSYWWN DKYLGPAVL
Sbjct: 61 ERARIDGPYECILCACCSSSCPSYWWNADKYLGPAVL 97
gi|2649932 (AE001057) succinate dehydrogenase, iron-sulfur subunit B
(sdhB) [Archaeoglobus fulgidus]
Length = 236
Score = 144 (66.6 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 32/58 (55%), Positives = 37/58 (63%)
Query: 67 KCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKV 124
K G VL+AL IK +DS+L FR SCR GICGSCAM IN LAC ++ T N V
Sbjct: 24 KRGMTVLEALYYIKENLDSSLAFRASCRMGICGSCAMKINDKPRLACETQVLTLGNAV 81
Score = 145 (67.1 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 121 LNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKL 180
L K+ PL + VIKDL+ + F+A++K+++PYL +KD++ ++ LQ+ EE +
Sbjct: 77 LGNAVKVEPLDNFKVIKDLITEFDGFFAKHKAVKPYLIRKDDNYAEPKELLQTPEELNEY 136
Query: 181 DGLYECILCACCSTSCPS 198
CI C C + CP+
Sbjct: 137 YVFTLCIKCGACYSVCPA 154
Score = 157 (72.6 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 204 DKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAI 263
D YLGPA + AYR+ DSRDD ER ++RCH M C+ CPK + P KA+
Sbjct: 159 DGYLGPAAMTAAYRFCADSRDDGQRERYEIASSSNGVWRCHLAMECSEVCPKNVEPAKAV 218
Query: 264 AEIKKMMA 271
++K A
Sbjct: 219 QMLRKKTA 226
gi|474045 (X75823) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 98
Score = 375 (173.5 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 65/98 (66%), Positives = 82/98 (83%)
Query: 116 RIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
+IDT L+K +KIY L HMYV+KDLVPDLS F+ QY+SI+P+L+K ++ G++Q QS +
Sbjct: 1 KIDTGLSKTTKIYSLSHMYVMKDLVPDLSLFFEQYRSIQPWLQKNEKLTLGEKQMFQSAD 60
Query: 176 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLM 213
E ++DGLYECILCACCS+SCPSYWWN DKYLGPAVLM
Sbjct: 61 EVPRIDGLYECILCACCSSSCPSYWWNADKYLGPAVLM 98
gi|474047 (X75824) succinate dehydrogenase subunit-B [Haemonchus contortus]
Length = 96
Score = 361 (167.0 bits), Expect = 2.9e-41, P = 2.9e-41
Identities = 62/96 (64%), Positives = 79/96 (82%)
Query: 147 YAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKY 206
+ QY+SI+P+L+KK + G +Q QS + RE+LD LYECILC CCS+SCPSYWWN DKY
Sbjct: 1 FEQYRSIQPWLQKKAPLKLGDKQMFQSEKARERLDMLYECILCRCCSSSCPSYWWNADKY 60
Query: 207 LGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYR 242
LGPAVLMQAYRW+IDSRDD+ +ERLA++ D FS ++
Sbjct: 61 LGPAVLMQAYRWIIDSRDDYPKERLARMHDAFSAFK 96
gnl|PID|e263860 (Y07709) SDH subunit B-homologue; iron-sulphur protein
[Natronobacterium pharaonis]
Length = 287
Score = 40 (18.5 bits), Expect = 3.4e-37, Sum P(5) = 3.4e-37
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 26 SRGAQTAAATAPRIKKFAIYRWDPDKAGDK 55
S A++ + A + ++R+DP+ G K
Sbjct: 35 SERAKSDLSDADETVQIKVFRYDPEVEGKK 64
Score = 133 (61.5 bits), Expect = 3.4e-37, Sum P(5) = 3.4e-37
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 69 GPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLAC 113
G VLDALI ++ DSTLTFR SCR+ ICGS A+ +NG L C
Sbjct: 78 GMTVLDALIYARDHFDSTLTFRHSCRQAICGSDALFVNGAQRLGC 122
Score = 154 (71.2 bits), Expect = 3.4e-37, Sum P(5) = 3.4e-37
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 126 KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYE 185
+I PLPH V+KDLV D+ +FY Q +S+EPY + + ++ Q+ E REK+
Sbjct: 134 RIEPLPHAEVVKDLVVDMEHFYDQMESVEPYFQTNELPDGELEEQRQTRENREKVKMSTR 193
Query: 186 CILCACCSTSC 196
CI C+ C +SC
Sbjct: 194 CIWCSACMSSC 204
Score = 61 (28.2 bits), Expect = 3.4e-37, Sum P(5) = 3.4e-37
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 204 DKYLGPAVLMQAYRWMIDSRD 224
++YLGPA + +AYR+ +D R+
Sbjct: 211 NEYLGPAAINKAYRFAMDKRE 231
Score = 76 (35.2 bits), Expect = 3.4e-37, Sum P(5) = 3.4e-37
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 224 DDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKK 268
++ + RL ++ ++RC T +CT CPK + + I E+K+
Sbjct: 233 EEMKQHRLNIIEQEHGVWRCQTQFSCTEVCPKDIPLTEHIQELKR 277
sp|Q10761|FRDB_MYCTU FUMARATE REDUCTASE IRON-SULFUR PROTEIN
gnl|PID|e248543 (Z74020) frdB [Mycobacterium tuberculosis]
Length = 247
Score = 243 (112.4 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 52/128 (40%), Positives = 73/128 (57%)
Query: 72 VLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLP 131
VLD L IK+ +D TL+FR SCR GICGS M ING LAC + L ++ P+
Sbjct: 35 VLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMR 94
Query: 132 HMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCAC 191
+ VI+DLV D+S+F A+ S++P+L + DE +Y Q+ E + CI C
Sbjct: 95 NFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCML 154
Query: 192 CSTSCPSY 199
C ++CP Y
Sbjct: 155 CYSACPVY 162
Score = 117 (54.1 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 206 YLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAE 265
+LGPA + R+ +DSRD +R L + C + C+ CPKG++P AI
Sbjct: 168 FLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQR 227
Query: 266 IKKMMATYKEKK 277
K AT+ KK
Sbjct: 228 YKLTAATHALKK 239
Parameters:
V=100
B=50
H=0
Lambda K H
0.321 0.135 0.418
Cutoff to enter 2nd pass: >= 42 ( 0.0 bits)
E S T1 T2 X1 X2 W Gap
10.0 64 11 11 -16 -22 40 50
Database: Non-redundant GenBank CDS translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jan 25, 1999 6:40 PM
# of letters in database: 107,935,385
# of sequences in database: 353,547
Number of Hits to DB: 1st pass: 58793121, 2nd pass: 2141219
Number of Sequences: 1st pass: 353547, 2nd pass: 6131
Number of extensions: 1st pass: 2422298, 2nd pass: 1642477
Number of successful extensions: 1st pass: 6131, 2nd pass: 16800
Number of sequences better than 10: 102