NPS@ : CLUSTALW ALIGNMENT


                                                               0        10        20      
                                 |         |         |         |         |         |
Homo                      ---------MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRP
Bos                       ---------MAALLLRHVGRHCLRAHLSPQLCIRNAVPLGTTAKEEMERFWSKNTTLNRP
Sus                                                             LGTTAKEEMERFWNKNLGSNRP
gallus                    ---------MAALVLRCVARRCLLARLSPGPSVHHVVPMATTAKEEMARFWEKNTKSSRP
D.melanogaster            -------MYALSSSLIRSPALRQGLQMAAASRQVSMKVVSVAETQKDESFFEKNERLGRE
S.cerev   MSAMMVKLGANKSALLLKPSAFSRAAALSSSRRLLFNTARTNFLSTSPLKNVASEMNTKAAIAEEQILNKQRAKRP
Ustilago mlatrsmlsltlastrsvgrvglrsapamptmalrsalttsprmvstssksnaaaqttkltqqqnldllnqqraqrp
Coprinopsis_cinerea       MMTSRALGLGSALRTAAFTPRTLRNQVVLRNSITRRFVQTESLTPAENLQLLNKQRLKRP
Marchantia_p              ------------------------------------------------------MKINRP
Reclinomonas_a            --------------------------------------MISINFNFLKIKGIINMNINRP
Chondrus_c                -------------------------------------------------MFIKFKISNRP
Porphyra_p                -----------------------------------------------------MYNINRP
Rickettsia_p              -----------------------------------------------MTKIKQEIYNKRP
Paradeni                  --------------------------------------------------MADVNRGNRP
Brady-jap                                                                     MTARIERP 
Brady-sp                                                                      MTARIERP
EcoliSDH                  --------------------------------------------------MIRNVKKQRP
Caenorhabditis_b          -------MINIPTSILCRLGARSAISRSFGTSVVTKSEAKTPIQKFGWEYLKKQRDMKRP
                                                                                **
Prim.cons.            MAALLLRHVGRHCLRAHFSP22222QLCIRN2VP333LGTTAKEEMERFWIKN2TGSNRP

                            30        40        50        60         70     ---   80 
                            *|   *   * |         |         |         |      ---   |
Homo                  LSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKS---LCL
Bos                   LSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKS---LCL
Sus                   LSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKS---LCL
gallus                LSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKS---LSL
D.melanogaster        LSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL
S.cerev               ISPHLTIYQPQLTWYLSSLHRISLVLMGLGFYLFTILFGVSGLLGLGLTTEKVSNWYHQKF
Ustilago maydis       ssphftiyqpqitwllsiinritgtglsvsyagyplfgsaealssasltdfv-----atl
Coprinopsis_cinerea   SSPHFTIYQPQLTWLGSIAKRVTGAGLSVLLYGFSIAYLIAPGTFDSAHVVEFV---AGL
Marchantia_p          LSPHLTIYKPQLTSTFSIFHRISGAFLATMVLFSILFFKIGDLSLTFYHFYQYFFFLTFY
Reclinomonas_a        ISPHLTIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSIAYTLNQY
Chondrus_c            IAPHLLVYTPQLSSLFSIWHRISGVGLAFFFTTFLIFIRIILSSNFACNLLTLIS--FEI
Porphyra_p            ISPHLTIYNTQKSSLFSIWHRISGVAMFTLIASPPLFLKLATFSYKSFNILDLM---LNN
Rickettsia_p          TSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLASCC------
Paradeni              LSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVAAVTSPGAFACADWV-----V
Brady-jap             LSPHMQVYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQAFT 
Brady-sp              LSPHIQTYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQAFT
EcoliSDH              VNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAI-----M
Caenorhabditis_b      IAPHLTIYQPQLTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLDFTTFVEYIRG---WNL
                         .:       .   *   * :*      .                             
Prim.cons.            LSPHLTIYKPQLT2AMSI2HRITGVALSAGVSLFGL2LLLLPGSFES2LELVKS32LLCL

                     80        90       100       110       120 -      130       140   
                      |         |         |         |         | -        |         |
Homo                  GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQ-SGVVVLVLTVLSSMGLA
Bos                   GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQ-SGVAVLVLTVLSSVGLA
Sus                   GPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQ-SGVVVLILTVLSSVGLA
gallus                SPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQ-SGVVVLILTLLSSAGIA
D.melanogaster        SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYS-TGYAMVATSFVLSAILALL
S.cerev               SKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYR-TGYALIGFTAVLGTYLLTL
Ustilago maydis       pawfktavkaplalafsfhslnglrhlawdwgfaltikgvys-tayvvlgatalstigllli
Coprinopsis_cinerea   PDGVKYAGKAILAAPFSYHAWNGLRHLAWDAGKFLSVKGAYA-TGYAVLGLTGVSTVVLT
Marchantia_p          LNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLELSKVYT-SGIIMLFCAAFLALLNI
Reclinomonas_a        SGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYL-TGYIMLGLAFLFTLIAW
Chondrus_c            SQWIIIYFNLFILLFLFYHLFNGTRHIIWDFGFLLDIKYLSK-FSLFLLVSLSLILIFQ-
Porphyra_p            SSLILPWFIVIISVIFLYHIINGIRHFLWDSVVNVNTESIIK-DSNTLLALVFLIMLFKF
Rickettsia_p          ---IIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNI-TGWCVVVCSILLTMLLW
Paradeni              RSWLGFIILTGSMWALWYHLLAGLRHLFYDAGYGLEIEQAHK-SSQALIAGSVVLAVLTL
Brady-jap             GSIIGRLIVFGYTWALMHHMLSGIRHFVWDLGYGFKANEREALTWGALIGGIVLTVLIWI 
Brady-sp              GSIIGRLIVFGFTWALMHHMLSGIRHFVWDLGYGFKANEREALTWGALIGGVVLTVLVWI
EcoliSDH              GSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAG
Caenorhabditis_b      PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIALAIV
                         .             :*   * *.:  *              .   .    .      
Prim.cons.            2PALI2TAKFA22FPLMYHTWNGIRHLMWDLGKGLEI3Q2Y22SGV3VLVLTVLSSL2LA

                     150
                       |
Homo                  AM------------
Bos                   AM------------
Sus                   AM------------
gallus                AIS-----------
Coprinopsis_cinerea   FFK-----------
Marchantia_p          IRQHWSNGQIPY--
Reclinomonas_a        IIF-----------
Chondrus_c            --------------
Porphyra_p            IL------------
Rickettsia_p          V-------------
Paradeni              IVFFVF--------
Brady-jap             VAYAIGGGR 
Brady-sp              IAYAIGGGR
EcoliSDH              VLVW----------
Caenorhabditis_b      INSCQNKSKAVKTA
                                                                                  
Prim.cons.            IM2433222222TA

Alignment data :
Alignment length : 194
Identity (*) : 9 is 4.64 %
Strongly similar (:) : 4 is 2.06 %
Weakly similar (.) : 8 is 4.12 %
Different : 173 is 89.18 %
Sequence 0001 : Homo ( 169 residues).
Sequence 0002 : Bos ( 169 residues).
Sequence 0003 : Sus ( 140 residues).
Sequence 0004 : gallus ( 141 residues).
Sequence 0005 : Coprinopsis_cinerea ( 179 residues).
Sequence 0006 : Marchantia_p ( 137 residues).
Sequence 0007 : Reclinomonas_a ( 144 residues).
Sequence 0008 : Chondrus_c ( 127 residues).
Sequence 0009 : Porphyra_p ( 125 residues).
Sequence 0010 : Rickettsia_p ( 124 residues).
Sequence 0011 : Paradeni ( 130 residues).
Sequence 0012 : EcoliSDH ( 129 residues).
Sequence 0013 : Caenorhabditis_b ( 184 residues).

CLUSTALW options used :
endgaps=1
gapdist=8
gapext=0.2
gapopen=10.0
hgapresidues=GPSNDQERK
matrix=gonnet
maxdiv=30
outorder=aligned
pwgapext=0.1
pwgapopen=10.0
pwmatrix=gonnet
type=PROTEIN