Drosophila mature starts 45?
 1 mslslllrga vrcnaanlvk saritplksy stlvanvqrk avvqplavak ivapvvreis 61 vsaprmasag sshtllwtve rivsagllav ipaafiapsq vldalmaisv vihthwgvea 121 mvvdymrpsv vgnvlpkvah ialiiisvat lgglfyfiqn dvglangikr fwaikgkdae 181 ka
Somewhat ambguous- hydropathy, hydro-moment plot might help.
N-term in insects and nematodes is OK
In some may be leader peptide.

Asuumx3       MLSAVRRAIPLSARILRTSLI
QRCAGA Celegans     MAASLRHMAHFQKALLVA Asperg.o. MASIARQSSLLRQSCLSAFRSPFATRNGAGVSQVVAFHA
10 20 30
 | | | | * | |
Humanx2 --------------------------SGSK
AASLHWTSERVVSVLLLGLLPAAYLNP
QPSbov --------------------------SGSKAASLHWTGERVVSVLLLGLIPAAYLNP
Gallus --------------------------GSSKAASLHWTSERAVSALLLGLLPAAYLYP
Droso        ---PLAVAKIVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAP Asuumx3      ----TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIH Celegans     ---RSAPRISTIVRATSTLNDGNDGASKVPDHSMHFKLERLWAVGMLPILPASYFIH
Sacchcere
LTIPFLPVLPQKPGGVRGTPNDAYVPPPENKLSYHWYMEKIFALSVVPLATTAMLTTGPL
Asperg.o. SAKKQILPPLPQTIQGTMNDPAPIPTPHPSEGSYHWTFERAISAGLVPLTIAPFAAG
Chondrus                        MITFQWLIVRVVALFISLTILIDI Porphyra        MYKTLLAQVFFHSIAKKKLYFFWL-PRLFSLLLVPGFLFDI S.lycopersicum MKEGISGLRNESSKTKRTGLFQRITAAFLLPLIIIYK
Rrubrum       MSLRSPLGRARRGFRQGGAANHWMAERLPAIALVPLALWFVFV-- Reclinomonas       MTEKLLHFIRTKSGSMHWWLQRFLAILLAPIILYLLFD parden MRYITPRKAAEGLGSAHEGTQHHWAMTVSAVALTVLTPLFMIVV
Brady MSATDTPKRSMRTPLGRVRNLGAAHSGTSDFWRQRITGVAMVLMMIPVIVI--- EcoliSDH --------------------MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGEGF
Woli MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILL ???
TMHelix 1

30 40 50 60
 | |
| * | ** |
Humanx2
----------------------CSAMDYSLAAALTLHGHWGLGQVVTDYVH
QPSbov
----------------------CSAMDYSLAATLTLHSHWGIGQVVTDYVH
Gallus
----------------------GPAVDYSLAAALTLHGHWGLGQVITDYVH
Droso       -----------------------SQVLDALMAISVVIHTHWGVEAMVVDYMR Asuumx3      ----------------------GREMDLCLALALTLHVHWGVWGVVNDYGR Celegans     ----------------------GPVMDAVLTVALTLHIHWGIHGVVYDYAR Sacchcere ----------------------STAADSFFSVMLLGYCYMEFNSCITDYIS
Asperg.o ------------- -------
SLNMDAVLCSFIVLHSHIGFQAAIIDYFP
Chondrus    ------------------------EMFVVMLSFLIIHISIGLKAIIHDYIH Porphyra     --(bact linker helix)---EILFLFHPIILLHASLGLSVIIEDYIH S.lycopersicum KVSSTFLLNLSLFWHINEGIEEIMADYVH Rrubrum       AIISNLGASYAQIQAFMAVPLNATLMLLTVFCAFFHGALGLIVIIEDYVQ Reclinomona VAIYIGQQSDPTVMMFLNRIFNHNSIFIFITSVILIWHVRGGMEVIIEDYVH parden ARAIGLSQEQLLAYFGRPFPALITA---LFVIVGMVHFIKGTRIMIDDYFQ--
Bradyx9        IVMLFGRNQAFVAQTIGSLPIAIIMLLFIFASAWHMKIGMQVVIEDYVH EcoliSDH PVFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVK
Woli GDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQY
bact linker helix TMHelix 2

70 80 90 100 110
| | | |
Humanx2
---GDALQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
QPSbov
---GDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL
Gallus
---GDTPIKVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI TGL:G82 pocket where C:L61 inserts
Droso       PSVVGNVLPKVAHIALIIISVATLGGLFYFIQNDVGLANGIKRFWAIKGKDAEKA
Asuumx3     PFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL--- Celegans    PYVIGEAAAKAAHVGVYLITGLLLGALLHFNTNDVGITKAFELVFSL--- Sacchcere ERVYGVWHKYAMYMLGLGSAVSLFGIYKLETENDGVVGLVKSLWDSSEKDNSQKIEAKK
Asperg.o. TRRVPKTATFCNWLLRAFTLTTAVGLYEFETNDVGVTEAFKRVWKA
Chondrus     FQKIKLMLLILLRVSAIEISRSFRTFYIIIKNT-- Porphyra     IETIKFQYLSLIKLLLVLLINLNILYLL--- S.lycopersicum QEMTRNWILVYLRLFLLIVIKDVFLSLVFFLKKK
Rrubrum      NHAVKNALVFGTKLYALFGAVLAAVSILKLTFGG Reclinomonas   GEKTRIVSIFLIRVIAIEIMEYLYKCSIIF----- paradeni GGTRKVAIIFSVIFGWAVIAAAVYALARMGLGAIVVL
Bradyx9       NEKLKLTAIMLNNFFSIAVALASTYAILKLSSGV EcoliSDH ---PLALRLMLQLVIVVALVVYVIYGFVVVWG based on structure
Woli LTF<helix 3 omitted>
TMHelix 3 Vert CTHelix
------------------------------- ----------

Here we are aligning SDHD with the first two helices of wolinella FRD, 
because thats what the structure aligns (and SDHC with last 3) but there is no real homolgy
[Paracoccus denitrificans] MRYITPRKAAEGLGSAHEGTQHHWAMTVSAVALTVLTPLFMIVVARAIGLSQEQLLAYFGRPFPALITAL FVIVGMVHFIKGTRIMIDDYFQGGTRKVAIIFSVIFGWAVIAAAVYALARMGLGAIVVL

Aspergg.o SDHD AB449815: D124E
10 20 30 40 50 60
MASIARQSSL LRQSCLSAFR SPFATRNGAG VSQVVAFHAS AKKQILPPLP QTIQGTMNDP
APIPTPHPSE GSYHWTFERA ISAGLVPLTI APFAAGSLNP VMDAVLCSFI VLHSHIGFQA
AIIeYFPTRR VPKTATFCNW LLRAFTLTTA VGLYEFETND VGVTEAFKRV WKA

-structural alignment of SDHD: 3d tmh is offset, but pretty clear D62-D88 DTP-NY
E.col D87 D113 LAL-VW
and this seems to ext back to 32, 57 (but with displacement in the 2-3 linker GPA/AKV

>NP_054431.1 succinate dehydrogenase subunit 4 (mitochondrion) [Marchantia paleacea] MKTHRETLGHWLLQRITAAFLIPTILIANVSTLILLNILLFWHIHVGIEEILADYVHHEVTRNWILILLR VFCLIIIKYVFVFFVF

1 Human 129
2 bovine 129
3 Gallus 129
4 EcoliSDH 129
1 -- -- -- M1
2 -- -- -- V2
3 -- -- -- S3
4 -- -- -- N4
5 -- -- -- A5
6 -- -- -- S6
7 S1 S1 G1 A7
8 G2 G2 S2 L8
9 S3 S3 S3 G9
10 K4 K4 K4 R10
11 A5 A5 A5 N11
12 A6 A6 A6 G12
13 S7 S7 S7 V13
14 L8 L8 L8 H14
15 H9 H9 H9 D15
16 W10 W10 W10 F16
17 T11 T11 T11 I17
18 S12 G12 S12 L18
19 E13 E13 E13 V19
20 R14 R14 R14 R20
21 V15 V15 A15 A21
22 V16 V16 V16 T22
23 S17 S17 S17 A23
24 V18 V18 A18 I24
25 L19 L19 L19 V25
26 L20 L20 L20 L26
27 L21 L21 L21 T27
28 G22 G22 G22 L28
29 L23 L23 L23 Y29
30 L24 I24 L24 I30
31 P25 P25 P25 I31
32 A26 A26 A26 Y32
33 A27 A27 A27 M33
34 Y28 Y28 Y28 V34
35 L29 L29 L29 G35
36 N30 N30 Y30 F36 *
37 P31 P31 P31 F37 *
38 C32 C32 G32 A38 *
39 -- -- -- T39
40 -- -- -- S40
41 -- -- -- G41
42 -- -- -- E42
43 -- -- -- L43
44 -- -- -- T44
45 -- -- -- Y45
46 -- -- -- E46
47 -- -- -- V47
48 -- -- -- W48
49 -- -- -- I49
50 -- -- -- G50
51 -- -- -- F51
52 -- -- -- F52
53 -- -- -- A53
54 -- -- -- S54
55 -- -- -- A55
56 -- -- -- F56
57 -- -- -- T57
58 S33 S33 P33 K58 *Shenoy&Yu
59 A34 A34 A34 V59 *AzidoQ-labeled
60 M35 M35 V35 F60 *peptide at
61 D36 D36 D36 T61 *distal site.
62 Y37 Y37 Y37 L62 *
63 S38 S38 S38 L63
64 L39 L39 L39 A64
65 A40 A40 A40 L65
66 A41 A41 A41 F66
67 A42 T42 A42 S67
68 L43 L43 L43 I68
69 T44 T44 T44 L69
70 L45 L45 L45 I70
71 H46 H46 H46 H71 Heme Ligand
72 G47 S47 G47 A72
73 H48 H48 H48 W73
74 W49 W49 W49 I74
75 G50 G50 G50 G75
76 L51 I51 L51 M76
77 G52 G52 G52 W77
78 Q53 Q53 Q53 Q78
79 V54 V54 V54 V79
80 V55 V55 I55 L80
81 T56 T56 T56 T81
82 D57 D57 D57 D82 D88 in paradeni- carboxin resist.
83 Y58 Y58 Y58 Y83 Quinone Ligand
84 V59 V59 V59 V84
85 H60 H60 H60 K85
86 G61 G61 G61 P86
87 D62 D62 D62 L87
88 A63 A63 T63 A88
89 L64 V64 P64 L89
90 Q65 Q65 I65 R90
91 K66 K66 K66 L91
92 A67 A67 V67 M92
93 A68 A68 A68 L93
94 K69 K69 N69 Q94
95 A70 T70 T70 L95
96 G71 G71 G71 V96
97 L72 L72 L72 I97
98 L73 L73 Y73 V98
99 A74 V74 V74 V99
100 L75 L75 L75 A100
101 S76 S76 S76 L101
102 A77 A77 A77 V102
103 L78 F78 I78 V103
104 T79 T79 T79 Y104
105 F80 F80 F80 V105
106 A81 A81 T81 I106
107 G82 G82 G82 Y107
108 L83 L83 L83 G108
109 C84 C84 C84 F109
110 Y85 Y85 Y85 V110
111 F86 F86 F86 V111
112 N87 N87 N87 V112
113 Y88 Y88 Y88 W113
114 H89 H89 Y89 G114
115 D90 D90 D90 V115
116 V91 V91 V91 --
117 G92 G92 G92 --
118 I93 I93 I93 --
119 C94 C94 C94 --
120 K95 K95 K95 --
121 A96 A96 A96 --
122 V97 V97 V97 --
123 A98 A98 A98 --
124 M99 M99 M99 --
125 L100 L100 L100 --
126 W101 W101 W101 --
127 K102 K102 S102 --
128 L103 L103 I103 --
129 104 104 104 116
>Human
------SGSKAASLHWTSERVVSVLLLGLLPAAYLNPC-------------------SAMD
YSLAAALTLHGHWGLGQVVTDYVHGDALQKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
>bovine
------SGSKAASLHWTGERVVSVLLLGLIPAAYLNPC-------------------SAMD
YSLAATLTLHSHWGIGQVVTDYVHGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL
>Gallus
------GSSKAASLHWTSERAVSALLLGLLPAAYLYPG-------------------PAVD
YSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI
>EcoliSDH
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFT
LLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV-------------




>Human
----------------------------------SGSK
AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
>bovine
----------------------------------SGSK
AASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVVTDYVHGDAV
QKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL
>Gallus
----------------------------------GSSK
AASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTP
IKVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI
>EcoliSDH
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVG--
---FFATSGELTYEVWIGFFASAFT---KVFTLLALFSILIHAWIGMWQVLTDYVKPLAL
R-------LMLQLVIVVALVVY------VIYGFVVVWGV

Asperg.o SDHD AB449815: D124E
10 20 30 40 50 60
MASIARQSSL LRQSCLSAFR SPFATRNGAG VSQVVAFHAS AKKQILPPLP QTIQGTMNDP
APIPTPHPSE GSYHWTFERA ISAGLVPLTI APFAAGSLNP VMDAVLCSFI VLHSHIGFQA
AIIeYFPTRR VPKTATFCNW LLRAFTLTTA VGLYEFETND VGVTEAFKRV WKA