10        20        30        40        50        60
                                    |         |         |         |         |         |
Rhizobiumleguminosarum     -----------MNYTTETMVIAVAAFLALLVAAFAH--DHLFAVHMGILCLCLVMGAVLM
Rhizobiumetli              -----------MNYTTETMVIAVAAFLALLAAAFAH--DHLFAVHMGILCLCLVAGTLLL
Sinorhizobiummeliloti      -----------MKHTVEMVVLSVGAFLALVGAGLAQ--DRLFGAHMWVLFFALLAGTLVL
Agrobacteriumtumefaciens   -----------MNYTLETADRALGAFPALLGAAFAH--DSLFAAHMWVLFFTLVVSTLLL
Rhodobactersphaeroides     -----------MWDYVKLVALGVIALCSAIAANYAR--DLAYMVNPVSVILVAGGLFLWQ
Paracoccusdenitrificans    -----------MLDTIKLIALGTIAVLAAIAANYARPDDLAYLVNALIIMLAAGIMFLRV
Rcaps_cbb3                 -----------MWDYVKLVALGVVAAIAAYAASQAR--DLPYMVNMVEVALAAVIALIWV
Bradyrhizobiumjaponicum    MSQPSISKSMTIGESGLAVVFAATAFLCVIAAAKAL--DAPFAFHAALSAAASVAAVFCI
                                      :         .  *  .   *  *   *  :  :            .  
Prim.cons.                 MSQPSISKSMTMN2TVE2VVLAV3AFLAL2AAAFA2PDDLLFAVHM3IL3LALVAGTLLL

                                   70        80        90       100       110       120
                                    |         |         |         |         |         |
Rhizobiumleguminosarum     VRKVDFSPAGQQRNVD--RSGYFDEVIRYGLIATVFWGVVGFLVGVIIALQLAFPDLNI-
Rhizobiumetli              VRNAEFSPTGQQRKTE--LTGYCDEVIRYGLIATVFWGVVGFLVGVIIALQLAFPDLNI-
Sinorhizobiummeliloti      MRRVDFRPAVAGHPGR--RREYFDEVVKYGVVATVFWGVVGFLVGVVVALQLAFPELNV-
Agrobacteriumtumefaciens   LRRVSFLPPVAGPPCR--RTEYFDEVVKYGVMATVFWGVVGFLVGVVVALQLAFPDLNI-
Rhodobactersphaeroides     VPRVG-DEV-RPKPAL--QTEYMDGVIPYGVVATAFWGVVGFLVAVIIAFQLAFPQLNF-
Paracoccusdenitrificans    LRQMGNEQP-ALEPHP--ETQYMDDVVRAGVIATAFWGVVGFLVGVVIAFQLAFPALNLS
Rcaps_cbb3                 LRTMG-----DPKPS---KDEYFDGVIRAGVIATTFWGIVGFLVAVVIAFQLAFPALNL-
Bradyrhizobiumjaponicum    VNRYFERPAALPPAEINGRPNYNMGPIKFSSFMAMFWGIAGFLVGLIIASQLAWPALNFD
                           :                    *    :  . . : ***:.****.:::* ***:* **. 
Prim.cons.                 VRRVGF2PA2AP3P8RNGRTEYFDEVIRYGVIATVFWGVVGFLVGV2IALQLAFP2LNI2

                                  130       140       150       160       170       180
                                    |     H?  |         |         |         |         |
Rhizobiumleguminosarum     ---APYLNFGRLRPVHTSAVIFAFGGNALIMTSFYVVQRTCRARLFGG-NLAWFVFWGYQ
Rhizobiumetli              ---APYWNFGRLRPVHTSAVIFAFGGNALIMTSFYVVQRTCRARLFGG-TLAWFVFWGYQ
Sinorhizobiummeliloti      ---EPWFNFGRVRPLHTSAVIFAFGGNALIATSFYVVQRTSRARLFGG-DLGWFVFWGYQ
Agrobacteriumtumefaciens   ---APYFNFGRMRPLHTSAVIFAFGGNALIATSFYVVQRTCRARLFGG-NLGWFVFWGYN
Rhodobactersphaeroides     EWAHGYLNFGRLRPLHTSAVIFAFGGNALIATSFYVVQRTSAARLWGG-NLGWFVFWGYN
Paracoccusdenitrificans    DITMGYTNFGKLRPLHTSAVIFAFGGNGLIATSFYVVQRTSAARLWGG-NAAWFVFWGYQ
Rcaps_cbb3                 EFGNGMLNFGRLRPLHTSAVIFAFGGNALIASAFYVVQRTSAARLFGGTALGWFVFWGWQ
Bradyrhizobiumjaponicum    ---LPWISFGRLRPLHTSAVIFAFGGNVLIATSFYVVQKSCRVRLAGD-LAPWFVVVGYN
                                  .**::**:************ ** ::*****::. .** *.    ***. *::
Prim.cons.                 E33APYLNFGRLRPLHTSAVIFAFGGNALIATSFYVVQRT2RARLFGGTNLGWFVFWGYQ

                                  190       200       210       220       230       240
                                    |         |         |         |         |         |
Rhizobiumleguminosarum     LFIVMAATGYVLGITQGREYAEPEWYVDLWLTIVWVAYLAVYLGTILKRKEPHIYVANWF
Rhizobiumetli              LFIVMAATGYVIGINQSREYAEPEWYVDLWLTIVWVAYLAVYLGTILKRKEPHIYVANWF
Sinorhizobiummeliloti      LFIVLAASGYLLGITQSREYAEPEWYVDLWLTIVWVAYLVAFLGTIMKRKEPHIYVANWF
Agrobacteriumtumefaciens   LFIIMAATGYLLGITQGREYAEPEWYVDLWLTIVWVAYLATFLGTILTRKEPHISVANWF
Rhodobactersphaeroides     LFIVLVAQSYLLGATQSKEYAEPEWYLDLWLTIVWVCYLAAFLGTIIKRKEPHIYVANWF
Paracoccusdenitrificans    LFIVLAATGYILGATQSKEYAEPEWYVDWWLTVVWVVYLAVFLGTILKRKEPHIYVANWF
Rcaps_cbb3                 LIIVTAATSYLLGGSQGKEYAELNWHLDILVAVVWVAYLIAFLGTIFKRKEPHIYVANWF
Bradyrhizobiumjaponicum    FFILVAGTGYLLGVTQSKEYAEPEWYADLWLTIVWVVYLLVFLATIIKRKEPHIFVANWF
                           ::*: .. .*::* .*.:**** :*: *  :::*** ** .:*.**:.****** *****
Prim.cons.                 LFIV2AATGYLLGITQS2EYAEPEWYVDLWLTIVWVAYLAVFLGTILKRKEPHIYVANWF

                                  250       260       270       280       290       300
                                    |         |         |         |     C   |         |
Rhizobiumleguminosarum     YLSFIVTIAMLHVVNNLAVPASFLGSKSYSVSSGVQDALTQWWYGHNAVGFFLTAGFLGM
Rhizobiumetli              YLSFIVTIAMLHVVNNLAVPASFLGSKSYSLFSGVQDALTQWWYGHNAVGFFLTAGFLGM
Sinorhizobiummeliloti      YLAFIVTIAMLHVVNNLAVPVSFLGSKSYSAFSGVQDALTQWWYGHNAVGFFLTAGFLAM
Agrobacteriumtumefaciens   YLSFIVTIAMLHIVNNLAVPVSFLGVKSYSAFSGVQAALTQWWYGHNAVGFFLTAGFLGM
Rhodobactersphaeroides     YLAFIVTVAMLHIFNNLSIPVSFFGSKSVQVFSGVQDAMVQWWYGHNAVGFFLTAGFLGM
Paracoccusdenitrificans    YLSFIVTIAMLHIVNNLAIPVSLFGSKSVQLFSGVQDAMTQWWYGHNAVGFFLTAGFLGM
Rcaps_cbb3                 YLSFIVTIAMLHIVNNLAVPVSIFGTKSVQLMAGVQDAMTQWWYGHNAVGFFLTAGFLGM
Bradyrhizobiumjaponicum    YLAFIVTIAVLHLGNNPALPVSAFGSKSYVAWGGIQDAMFQWWYGHNAVGFFLTAGFLAI
                           **:****:*:**: ** ::*.* :* **    .*:* *: ******************.:
Prim.cons.                 YLSFIVTIAMLHIVNNLAVPVSF2GSKSYS2FSGVQDA2TQWWYGHNAVGFFLTAGFLGM

                                  310       320       330       340       350       360
                                    |         |         |     CC  |         |         |
Rhizobiumleguminosarum     MYYFVPKQANRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPDWAQTLGMVFSIMLWM
Rhizobiumetli              MYYFVPKQANRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPDWAQTLGMVFSVMLWM
Sinorhizobiummeliloti      MYYFIPKQVNRPVYSYRLSIIHFWAIIFMYIWAGPHHLHYTALPDWAQTLGMVFSIMLWM
Agrobacteriumtumefaciens   MYYFIPKQVNRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPDWAQTLGMVFSIMLWM
Rhodobactersphaeroides     MYYFVPKQAERPVYSYKLSIVHFWALIFLYIWAGPHHLHYTALPTWTSTLGMVFSIMLWM
Paracoccusdenitrificans    MYYFIPKQAERPVYSYKLSIIHFWALIFLYIWAGPHHLHYTALPDWASTLGMVFSIILWM
Rcaps_cbb3                 MYYFVPKQAERPVYSYKLSIVHFWALIFLYIWAGPHHLHYTALPDWASTLGMVMSVILWM
Bradyrhizobiumjaponicum    MYYFIPKRAERPIYSYRLSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWM
                           ****:**:.:**:***:***:****:**:*************** *:.****.:*::***
Prim.cons.                 MYYF2PKQA2RPVYSYRLSIIHFWALIF2YIWAGPHHLHYTALPDWAQTLGMVFSIMLWM

                                  370       380       390       400       410       420
                                    |         |         |         |         |         |
Rhizobiumleguminosarum     PSWGGMINGLMTLSGAWDKIRTDPIIRMMIVAIAFYGMSTFEGPMMSVKTVNSLSHYTEW
Rhizobiumetli              PSWGGMINGLMTLSGAWDKIRTDPIIRMIIVAIAFYGMSTFEGPMMSIKAVNSLSHYTEW
Sinorhizobiummeliloti      PSWGGMINGLMTLSGAWDKIRTDPVVRMMVMAVAFYGMATFEGPMMSIKTVNSLSHYTDW
Agrobacteriumtumefaciens   PSWGGMINGLMTLSGAWDKIRTDPIVRMMVMAVAFYGMATFEGPMMSIKAVNSLSHYTDW
Rhodobactersphaeroides     PSWGGMINGLMTLSGAWDKLRTDPIIRMMVVSIGFYGMSTFEGPMMSIKAVNSLSHYTDW
Paracoccusdenitrificans    PSWGGMINGLMTLSGAWDKLRTDPIIRMMVVAVGFYGMATFEGPMMSIKAVNFVSHYTDW
Rcaps_cbb3                 PSWGGMINGLMTLSGAWDKLRTDPVIRMMVVSIGFYGMSTFEGPMMSIKAVNSLSHYTDW
Bradyrhizobiumjaponicum    PSWGGMINGLMTLSGAWDKLRTDPVLRMLVVSVAFYGMSTFEGPMMSIKVVNSLSHYTDW
                           *******************:****::**:::::.****:********:*.** :****:*
Prim.cons.                 PSWGGMINGLMTLSGAWDK2RTDPIIRMMVVA2AFYGMSTFEGPMMSIKAVNSLSHYTDW

                                  430       440       450       460       470       480
                              H H   |         |         |         |         |         |
Rhizobiumleguminosarum     TIGHVHSGALGWVGMITFGAIYYLTPKLWGRERLYSLRMVNWHFWLATFGIVVYAAVLWV
Rhizobiumetli              QIGHVHSGALGWVGMITFGAIYYLTPKLWGRERLYSLRMVNWHFWLATLGIVIYAAVLWV
Sinorhizobiummeliloti      TIGHVHSGALGWNGLITFGAIYYLVPKLWNRERLYSVRMVNWHFWLATLGIVVYAAVMWV
Agrobacteriumtumefaciens   TIGHVHSGALGWNGMITFGAIYYLTPKLWGRDRLYSLQLVNWHFWLATLGIVVYAAVMWV
Rhodobactersphaeroides     TIGHVHSGALGWNGMITFGALYFLTPKLWNKERLYSLSLVSWHFWLATIGIVLYASSMWV
Paracoccusdenitrificans    TIGHVHSGALGWNGMITFGALYYLVPRLWGRERLYSTGLVSWHFWLATIGLVLYAASMWV
Rcaps_cbb3                 TIGHVHSGALGWNGMITFGMLYFLTPRLWGRSGLYSLKLVSWHFWLATIGIVLYASAMWV
Bradyrhizobiumjaponicum    TIGHVHSGALGWVGFVSFGALYCLVPWAWNRKGLYSLKLVNWHFWVATLGIVLYISAMWV
                            *********** *:::** :* *.*  *.:. ***  :*.****:**:*:*:* : :**
Prim.cons.                 TIGHVHSGALGWNGMITFGA2YYLTPKLWGRERLYSLRLVNWHFWLATLGIVLYAAVMWV

                                  490       500       510       520       530       540
                                    |         |         |         |         |         |
Rhizobiumleguminosarum     AGIQQGLMWREYNSQGFLVYSFAETVAAMFPYYVLRAVGGTLYLAGGLVMAWNVFMTIRG
Rhizobiumetli              AGIQQGLMWREYNSQGFLVYSFAETVAAMIPYYVLRAVGGALYLAGGFVMAWNVFMTIRG
Sinorhizobiummeliloti      AGIQQGLMWREYDDQGFLVYSFAETVAAMFPYYVMRAAGGALFLAGALLMAFNVTMTILG
Agrobacteriumtumefaciens   AGIQQALMWREYDSQGFLVYSFAESVAALFPYYVMRALGGLMFLSGALIMAYNVTMTILG
Rhodobactersphaeroides     SGIMEGLMWREVDANGFLVNAFADTVAAKFPMNVVRGLGGVLYLTGALIMCYNLWKTVTS
Paracoccusdenitrificans    SGIMEGLMWREVDAQGFLVNAFADTVAAKFPMNVVRALGGVLYLGGALIMCYNLWATVAK
Rcaps_cbb3                 TGIMEGLMWREVDAQGFLVNAFADTVAAKFPMYVVRGVGGVLYLLGGLIMAYNLWATVAK
Bradyrhizobiumjaponicum    SGILQGLMWRAYTSLGFLEYSFIETVEAMHPFYIIRAAGGGLFLIGALIMAYNLWMTVRV
                           :** :.****     ***  :* ::* *  *  ::*. ** ::* *.::*.:*:  *:  
Prim.cons.                 AGIQQGLMWREYDSQGFLVYSFAETVAAMFPYYVVRA2GGVLYLAGALIMAYN2WMT2RG

                                  550       560
                                    |         |
Rhizobiumleguminosarum     HLRDEAAIPTTFVPQAQPAE
Rhizobiumetli              HLRDEAPIPTSLVPQAQPAE
Sinorhizobiummeliloti      RVRDEEPIFG-AAPLPAPAE
Agrobacteriumtumefaciens   HQREEGASKG-AAPSLQPAE
Rhodobactersphaeroides     APSRVVRAAA------VPAE
Paracoccusdenitrificans    QPKTQSTAAA------VPAE
Rcaps_cbb3                 QPKTANLAVA------VPAE
Bradyrhizobiumjaponicum    GEAEVQMPVA-----LQPAE
                                            ***                                        
Prim.cons.                 HPRDEA223A2A2PQ2QPAE                                        
Alignment data :
Alignment length : 560
Identity (*) : 261 is 46.61 %
Strongly similar (:) : 93 is 16.61 %
Weakly similar (.) : 37 is 6.61 %
Different : 169 is 30.18 %
Sequence 0001 : Rhizobiumleguminosarum ( 540 residues).
Sequence 0002 : Rhizobiumetli ( 540 residues).
Sequence 0003 : Sinorhizobiummeliloti ( 539 residues).
Sequence 0004 : Agrobacteriumtumefaciens ( 539 residues).
Sequence 0005 : Rhodobactersphaeroides ( 535 residues).
Sequence 0006 : Paracoccusdenitrificans ( 539 residues).
Sequence 0007 : Rcaps_cbb3 ( 532 residues).
Sequence 0008 : Bradyrhizobiumjaponicum ( 549 residues).
CLUSTALW options used :
endgaps=1
gapdist=8
gapext=0.2
gapopen=10.0
hgapresidues=GPSNDQERK
ktuple=1
matrix=gonnet
maxdiv=30
outorder=aligned
pairgap=3
score=percent
topdiags=5
type=PROTEIN
window=5
Result files (text) :
CLUSTALW
Garnier parameters

Auto calculated
Decision constants HelixSheetTurnCoil
Return
 

SOPM parameters

Number of conformational states
Similarity threshold : Window width : 
Return

SOPMA parameters

Number of conformational states
Similarity threshold : Window width : 
Return

This service is supported by MESR (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE)
Comments. Last modified: Sun Apr 30 07:39:59 2000. Current time: Sun Apr 30 07:39:59 2000