Score E
Sequences producing significant alignments: (bits) Value
pir||S49346 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 497 e-140
gb|AAC46109.1| (AF016223) mono-heme cytochrome co [Rhodobac... 475 e-133
gb|AAB02557.1| (U58092) cbb3-type cytochrome c oxidase CcoO... 373 e-102
pir||S77596 cytochrome-c oxidase (EC 1.9.3.1) type cbb3 cha... 369 e-101
pir||S39989 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 354 4e-97
emb|CAB02450.1| (Z80340) FixOc [Rhizobium leguminosarum] 344 6e-94
gb|AAB58265.1| (U90521) cbb3-type cytochrome oxidase compon... 342 2e-93
gb|AAC15889.1| (U76906) mono-heme cytochrome c; FixO [Rhizo... 325 2e-88
pir||B55582 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 318 3e-86
pir||B47468 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 314 4e-85
gb|AAC72072.1| (AF054871) cytcbb3 cytochrome c oxidase CytO... 313 1e-84
pir||S54759 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 310 1e-83
pir||S49496 fixO protein - Agrobacterium tumefaciens >gi|55... 310 1e-83
dbj|BAA75503.1| (AB024290) cb-type cytochrome c oxidase Cco... 286 2e-76
emb|CAB85199.1| (AL162757) putative cytochrome oxidase subu... 206 2e-52
gb|AAF42069.1| (AE002522) cytochrome c oxidase, subunit II ... 206 2e-52
pir||H71969 cytochrome oxidase (cbb3-type) - Helicobacter p... 170 1e-41
pir||A64538 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 169 2e-41
emb|CAB73911.1| (AL139078) cb-type cytochrome C oxidase sub... 167 8e-41
dbj|BAA33527.1| (AB018105) cb-type cytochrome c oxidase su... 166 2e-40
dbj|BAA89394.1| (AB025342) ORF20 [Moritella marina] 144 7e-34
gb|AAC02673.1| (AF039956) cytochrome c oxidase CcoO subunit... 96 2e-19
pir||A54234 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - ... 39 0.042
gb|AAF25828.1|AF187306_1 (AF187306) putative transmembrane ... 34 1.4
pir||D54235 cb-type cytochrome-c oxidase 32K chain - Rhodob... 33 2.4
pir||C54235 cb-type cytochrome c oxidase 32K chain fixO - R... 33 3.1
pir||F54235 cb-type cytochrome-c oxidase 32K chain - Rhodob... 32 5.4
emb|CAA67340.1| (X98808) peroxidase ATP3a [Arabidopsis thal... 31 9.2
pir||S49346 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Rhodobacter
capsulatus >gi|2126457|pir||S65859 ccoO protein -
Rhodobacter capsulatus >gi|556814|emb|CAA56434.1|
(X80134) CcoO [Rhodobacter capsulatus]
Length = 242
Score = 497 bits (1265), Expect = e-140
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR
Sbjct: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS
Sbjct: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA
Sbjct: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA
Sbjct: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
Query: 241 SR 242
SR
Sbjct: 241 SR 242
gb|AAC46109.1| (AF016223) mono-heme cytochrome co [Rhodobacter capsulatus]
Length = 242
Score = 475 bits (1209), Expect = e-133
Identities = 230/242 (95%), Positives = 235/242 (97%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR
Sbjct: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVGGRYS
Sbjct: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
DAWHVEHL NPQSVVPESVMPSY YLA VPLDSTWIEDRVSTDA VGVPY++EMIA+AKA
Sbjct: 121 DAWHVEHLSNPQSVVPESVMPSYSYLANVPLDSTWIEDRVSTDALVGVPYSAEMIAAAKA 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
DFVAQADPNADS TL+A YGEKVNIRNFDG+PGLTEMDALVAYLQVLGTMVDFSTFQPVA
Sbjct: 181 DFVAQADPNADSATLVANYGEKVNIRNFDGKPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
Query: 241 SR 242
SR
Sbjct: 241 SR 242
gb|AAB02557.1| (U58092) cbb3-type cytochrome c oxidase CcoO subunit [Rhodobacter
sphaeroides]
Length = 241
Score = 373 bits (947), Expect = e-102
Identities = 179/242 (73%), Positives = 202/242 (82%), Gaps = 1/242 (0%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
M I+ KH +LE NATLLLIF+F VVTIGG+V+I PLFYLENTIEKVEG+RPYTPLEL GR
Sbjct: 1 MGILAKHKILETNATLLLIFSFFVVTIGGLVQIVPLFYLENTIEKVEGVRPYTPLELAGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
DIYIREGCYVCHSQMIRPMRDE ERYGHY+LAAESMYD PFQWGSKRTGPDLARVG RYS
Sbjct: 61 DIYIREGCYVCHSQMIRPMRDETERYGHYNLAAESMYDHPFQWGSKRTGPDLARVGERYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
D WHV+HL NPQSVVPES+MP YG+L+ +D +I D +S VGVPY+ EM+ +A A
Sbjct: 121 DEWHVDHLTNPQSVVPESIMPKYGFLSHTVIDGRYIRDLMSVHRIVGVPYSDEMLENAVA 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
DF AQA+P+AD+ LL YG K +RNFDGQ LTEMDAL++YLQVLGTMVDFSTF P
Sbjct: 181 DFKAQANPDADTDGLLERYG-KAAVRNFDGQAELTEMDALISYLQVLGTMVDFSTFTPDD 239
Query: 241 SR 242
SR
Sbjct: 240 SR 241
pir||S77596 cytochrome-c oxidase (EC 1.9.3.1) type cbb3 chain fixO - Paracoccus
denitrificans >gi|1002879|gb|AAC44517.1| (U34353) CcoO
[Paracoccus denitrificans]
Length = 241
Score = 369 bits (938), Expect = e-101
Identities = 176/242 (72%), Positives = 207/242 (84%), Gaps = 1/242 (0%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
M+I++KH VLEKNATLLL+F+FLVVTIGGIVEIAPLFYL+NTIEKV+GMRPYTPLEL GR
Sbjct: 1 MAILEKHKVLEKNATLLLVFSFLVVTIGGIVEIAPLFYLQNTIEKVQGMRPYTPLELKGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
DIY+REGCYVCHSQMIRPMRDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVGGRYS
Sbjct: 61 DIYVREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
D WH++HL++PQ+VVPES+MP YG+L +D++ ++ R+ TDA GVPY MIA+A
Sbjct: 121 DEWHLDHLVDPQAVVPESIMPKYGFLLNRQVDASNMQQRLKTDALGGVPYDDAMIAAAGE 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVA 240
DF QA P+AD++ L Y RNFD +PG++EMDAL+AYLQVLGTMVDFSTF+P
Sbjct: 181 DFRVQAAPDADASGLEERY-PGAQQRNFDRRPGVSEMDALIAYLQVLGTMVDFSTFEPDP 239
Query: 241 SR 242
+R
Sbjct: 240 NR 241
pir||S39989 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Rhizobium meliloti
>gi|49409|emb|CAA79902.1| (Z21854) FixO [Sinorhizobium
meliloti]
Length = 243
Score = 354 bits (899), Expect = 4e-97
Identities = 175/241 (72%), Positives = 199/241 (81%), Gaps = 2/241 (0%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MSI+DKH +LE+NATLLLI + LVV+IGGIVEIAPLFYLENTIEKVEGMRPY+PLEL GR
Sbjct: 1 MSILDKHAILERNATLLLIGSLLVVSIGGIVEIAPLFYLENTIEKVEGMRPYSPLELAGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
DIYIREGCYVCHSQMIRP RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVG RYS
Sbjct: 61 DIYIREGCYVCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGDRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
+ WHV+H+I P+SVVPESVMPSY +L + PL+ + + + VGVPYT EMI +A A
Sbjct: 121 NEWHVQHMIEPRSVVPESVMPSYAFLKETPLEVKNVAMSLEANRAVGVPYTDEMIGNAAA 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDGQP-GLTEMDALVAYLQVLGTMVDFSTFQPV 239
D AQADPNAD + + A Y K + +FDG P LTEMDALVAYLQ+LGT+VDFST+
Sbjct: 181 DLKAQADPNADGSGVEARY-PKAKLGDFDGDPQRLTEMDALVAYLQMLGTLVDFSTYDDA 239
Query: 240 A 240
A
Sbjct: 240 A 240
emb|CAB02450.1| (Z80340) FixOc [Rhizobium leguminosarum]
Length = 244
Score = 344 bits (872), Expect = 6e-94
Identities = 167/236 (70%), Positives = 197/236 (82%), Gaps = 2/236 (0%)
Query: 2 SIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRD 61
SI+DKH +LEKNATLLL+ + LVV+IGGIVEIAPLFYL+NTIEKVEGMRPYTPLEL GR+
Sbjct: 3 SILDKHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRN 62
Query: 62 IYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSD 121
IYIREGCY+CHSQMIRP RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVG RYS+
Sbjct: 63 IYIREGCYLCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSN 122
Query: 122 AWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKAD 181
WHV+HL +P++VVPES+MPSY +L + + + + + VGVPY +M+A+A+AD
Sbjct: 123 EWHVQHLADPRAVVPESIMPSYAFLKEQRVTVKDVGMDLKANEDVGVPYNDDMLANAEAD 182
Query: 182 FVAQADPNADSTTLLAGYGEKVNIRNFDGQP-GLTEMDALVAYLQVLGTMVDFSTF 236
AQADPNAD+T LLA Y K +FDG P LTEMDALV+YLQ+LGT+VDFST+
Sbjct: 183 MKAQADPNADTTALLARY-PKAKTGDFDGDPAALTEMDALVSYLQMLGTLVDFSTY 237
gb|AAB58265.1| (U90521) cbb3-type cytochrome oxidase component FixO [Rhizobium
leguminosarum bv. viciae]
Length = 244
Score = 342 bits (867), Expect = 2e-93
Identities = 166/236 (70%), Positives = 197/236 (83%), Gaps = 2/236 (0%)
Query: 2 SIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRD 61
SI+DKH +LEKNATLLL+ + LVV+IGGIVEIAPLFYL+NTIEKVEG+RPYTPLEL GR+
Sbjct: 3 SILDKHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGIRPYTPLELAGRN 62
Query: 62 IYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSD 121
IYIREGCY+CHSQMIRP RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVG RYS+
Sbjct: 63 IYIREGCYLCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSN 122
Query: 122 AWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKAD 181
WHV+HL +P++VVPES+MPSY +L + + + + + VGVPY +M+A+A+AD
Sbjct: 123 EWHVQHLADPRAVVPESIMPSYAFLKEQRVTVKDVGMDLKANEDVGVPYDDDMLANAEAD 182
Query: 182 FVAQADPNADSTTLLAGYGEKVNIRNFDGQP-GLTEMDALVAYLQVLGTMVDFSTF 236
AQADPNAD+T LLA Y K +FDG P LTEMDALV+YLQ+LGT+VDFST+
Sbjct: 183 MKAQADPNADTTALLARY-PKAKTGDFDGDPAALTEMDALVSYLQMLGTLVDFSTY 237
gb|AAC15889.1| (U76906) mono-heme cytochrome c; FixO [Rhizobium etli]
Length = 244
Score = 325 bits (825), Expect = 2e-88
Identities = 157/230 (68%), Positives = 189/230 (81%), Gaps = 2/230 (0%)
Query: 2 SIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRD 61
S++DKH LEKNATLLL+ + LVV+IGGIVEIAPLFYL+NTIEKVEG+RPYTP+EL GR+
Sbjct: 3 SLLDKHKTLEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGLRPYTPVELAGRN 62
Query: 62 IYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSD 121
IYIREGCY+CHSQMIRP RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLAR GRYS+
Sbjct: 63 IYIREGCYLCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARRAGRYSN 122
Query: 122 AWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKAD 181
WHV+HL NP++VVPES+MPSY +L + + I + + + VGVPY+ +M+A+A+AD
Sbjct: 123 EWHVQHLANPRAVVPESIMPSYAFLEEKEVTVRSIGEDLKANEDVGVPYSDDMLANAEAD 182
Query: 182 FVAQADPNADSTTLLAGYGEKVNIRNFDGQP-GLTEMDALVAYLQVLGTM 230
AQADPNAD+ LL Y N+ + DG P LTEMDALV+YLQ+LGT+
Sbjct: 183 MRAQADPNADTAALLKRY-PNANVGDLDGDPTRLTEMDALVSYLQMLGTL 231
pir||B55582 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Azorhizobium
caulinodans >gi|456312|emb|CAA52430.1| (X74410) fixO
[Azorhizobium caulinodans]
Length = 246
Score = 318 bits (807), Expect = 3e-86
Identities = 155/241 (64%), Positives = 186/241 (76%), Gaps = 2/241 (0%)
Query: 2 SIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRD 61
SI KH + EK++ LLL+ +V++IGG+VEI PLFYL++TIEKV+G+RPYTPLEL GR+
Sbjct: 5 SIWSKHAIFEKHSILLLLGVLIVISIGGLVEIVPLFYLKSTIEKVDGVRPYTPLELAGRN 64
Query: 62 IYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSD 121
IY+REGCY+CHSQMIRP+RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVGG+YSD
Sbjct: 65 IYLREGCYLCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGKYSD 124
Query: 122 AWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKAD 181
W +EHL NP++VVP S+MP+Y +LAK PL + I D + GVPYT EMIASA+ D
Sbjct: 125 LWQLEHLNNPRAVVPASIMPAYPWLAKTPLQAKHIADDMKVLRAEGVPYTDEMIASAQDD 184
Query: 182 FVAQADPNADSTTLLAGYGEKVNIRNFDGQPG-LTEMDALVAYLQVLGTMVDFSTFQPVA 240
QA P AD+ L Y K R+FDG PG LTE DAL+AYLQ LGT VDF + A
Sbjct: 185 LKLQATPEADADALQKRY-PKAQARDFDGNPGELTEADALIAYLQQLGTQVDFKLYDNKA 243
Query: 241 S 241
+
Sbjct: 244 N 244
pir||B47468 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Bradyrhizobium
japonicum >gi|152200|gb|AAA26204.1| (L07487)
transmembrane protein [Bradyrhizobium japonicum]
>gi|3021315|emb|CAA06280.1| (AJ005001) FixO protein
[Bradyrhizobium japonicum]
Length = 244
Score = 314 bits (797), Expect = 4e-85
Identities = 150/243 (61%), Positives = 188/243 (76%), Gaps = 3/243 (1%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MS +H V EKN+ +L++ LV+ IGG+VEI PLFYL++TIEKV+G+RPYTPLEL GR
Sbjct: 1 MSFWTRHQVFEKNSIILIVGILLVIAIGGLVEITPLFYLKSTIEKVDGVRPYTPLELAGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
++Y+REGCY+CHSQMIRP+RDEVERYGH+SLAAESM+D PFQWGSKRTGPDLARVG +YS
Sbjct: 61 NVYVREGCYLCHSQMIRPLRDEVERYGHFSLAAESMFDHPFQWGSKRTGPDLARVGAKYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
D WHV HL NP+++VP+SVMP Y +L+ +D I D + T VGVPYT + IA+A A
Sbjct: 121 DDWHVTHLTNPRAIVPQSVMPGYPFLSATEVDPDTIADHMRTLRTVGVPYTDDQIANASA 180
Query: 181 DFVAQADP-NADSTTLLAGYGEKVNIRNFDGQPGL-TEMDALVAYLQVLGTMVDFSTFQP 238
D AQADP NA + Y + V +RNFDG+ G TEMDAL+AYLQ+LGT+VDF +
Sbjct: 181 DLKAQADPDNAGADAFNKRYAKAV-VRNFDGKTGTPTEMDALIAYLQMLGTLVDFKIYNE 239
Query: 239 VAS 241
A+
Sbjct: 240 KAN 242
gb|AAC72072.1| (AF054871) cytcbb3 cytochrome c oxidase CytO subunit [Azospirillum
brasilense]
Length = 246
Score = 313 bits (793), Expect = 1e-84
Identities = 147/231 (63%), Positives = 182/231 (78%), Gaps = 1/231 (0%)
Query: 7 HHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIRE 66
H +E+N LL++ + V+IGG+V+I PLF +E+TIEKV+G+RPY+PLEL G++IY RE
Sbjct: 10 HDTIERNTLLLIVLILITVSIGGLVQIVPLFTIESTIEKVDGVRPYSPLELAGQNIYFRE 69
Query: 67 GCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVE 126
GCY CHSQ IRP RDEVERYGHYSLAAESMYD PFQWGSKRTGPDLARVGG+YS+ W V
Sbjct: 70 GCYNCHSQQIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGKYSNDWQVA 129
Query: 127 HLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFVAQA 186
HL++P++VVPES+MP Y ++ PL T I+D + T VGVPYT E IASAKAD AQ
Sbjct: 130 HLVDPRAVVPESIMPGYAWMKDRPLKYTDIQDHMKTLRIVGVPYTDEQIASAKADLEAQK 189
Query: 187 DPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQ 237
+P+AD+ L+ Y + V + NF G G+TEMDALVAYLQVLGTMVDF+ +Q
Sbjct: 190 NPDADTAGLMKRYPKAV-VANFTGNKGVTEMDALVAYLQVLGTMVDFTKYQ 239
pir||S54759 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Agrobacterium
tumefaciens (fragment)
Length = 213
Score = 310 bits (785), Expect = 1e-83
Identities = 148/210 (70%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MSI+DKH V+E+NATLLL+ + LVV+IGGIVEIAPLFYLENTIEKVEGMRPY+P+EL GR
Sbjct: 1 MSILDKHGVIERNATLLLVGSLLVVSIGGIVEIAPLFYLENTIEKVEGMRPYSPMELAGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
+IYIREGCYVCHSQMIRP RDEVERYGHY+LAAESMYD PFQWGSKRTGPDLARVG RYS
Sbjct: 61 NIYIREGCYVCHSQMIRPFRDEVERYGHYTLAAESMYDHPFQWGSKRTGPDLARVGDRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
+ WHV+HL NP+SVVPES+MPSY +L PL T + + + VGVPY+ EMI +
Sbjct: 121 NEWHVQHLANPRSVVPESIMPSYAFLKTTPLKITDVSMELKANRAVGVPYSDEMIEKSAT 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDG 210
D AQADPNAD LL Y K + +FDG
Sbjct: 181 DLHAQADPNADGAELLERY-PKAKVGDFDG 209
pir||S49496 fixO protein - Agrobacterium tumefaciens >gi|559398|emb|CAA86309.1|
(Z46239) FixO [Agrobacterium tumefaciens]
Length = 212
Score = 310 bits (785), Expect = 1e-83
Identities = 148/210 (70%), Positives = 170/210 (80%), Gaps = 1/210 (0%)
Query: 1 MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGR 60
MSI+DKH V+E+NATLLL+ + LVV+IGGIVEIAPLFYLENTIEKVEGMRPY+P+EL GR
Sbjct: 1 MSILDKHGVIERNATLLLVGSLLVVSIGGIVEIAPLFYLENTIEKVEGMRPYSPMELAGR 60
Query: 61 DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYS 120
+IYIREGCYVCHSQMIRP RDEVERYGHY+LAAESMYD PFQWGSKRTGPDLARVG RYS
Sbjct: 61 NIYIREGCYVCHSQMIRPFRDEVERYGHYTLAAESMYDHPFQWGSKRTGPDLARVGDRYS 120
Query: 121 DAWHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKA 180
+ WHV+HL NP+SVVPES+MPSY +L PL T + + + VGVPY+ EMI +
Sbjct: 121 NEWHVQHLANPRSVVPESIMPSYAFLKTTPLKITDVSMELKANRAVGVPYSDEMIEKSAT 180
Query: 181 DFVAQADPNADSTTLLAGYGEKVNIRNFDG 210
D AQADPNAD LL Y K + +FDG
Sbjct: 181 DLHAQADPNADGAELLERY-PKAKVGDFDG 209
dbj|BAA75503.1| (AB024290) cb-type cytochrome c oxidase CcoO subunit
[Magnetospirillum magnetotacticum]
Length = 240
Score = 286 bits (723), Expect = 2e-76
Identities = 144/240 (60%), Positives = 171/240 (71%), Gaps = 2/240 (0%)
Query: 4 MDKHHV-LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDI 62
M KHH LE N L + L + +GG+VE+ PLF +E+TIEKV+G+RPY+PLE GRDI
Sbjct: 1 MFKHHAKLETNIFFLAVGILLTIVVGGLVEVVPLFSIESTIEKVDGVRPYSPLEQKGRDI 60
Query: 63 YIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDA 122
YIREGCY CHSQMIRP +DEVERYGHYSLAAES YD PFQWGSKRTGPDLARVGG+Y+D
Sbjct: 61 YIREGCYNCHSQMIRPFKDEVERYGHYSLAAESKYDHPFQWGSKRTGPDLARVGGKYTDD 120
Query: 123 WHVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADF 182
W V HL NP+ VVP S+MP Y +LA+ PLD + I+ + VGVPYT IA+AK D
Sbjct: 121 WQVRHLTNPRDVVPGSIMPGYRHLAR-PLDYSDIQANMKALRVVGVPYTDAQIANAKKDL 179
Query: 183 VAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLGTMVDFSTFQPVASR 242
Q + + +A K I + G +TEMDALVAYLQVLGTMVDFST +P A R
Sbjct: 180 EEQVFADPAAKPAVAASYPKAKIGSATGNAKVTEMDALVAYLQVLGTMVDFSTVKPEAIR 239
emb|CAB85199.1| (AL162757) putative cytochrome oxidase subunit [Neisseria
meningitidis]
Length = 203
Score = 206 bits (519), Expect = 2e-52
Identities = 104/225 (46%), Positives = 136/225 (60%), Gaps = 29/225 (12%)
Query: 4 MDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIY 63
M + E+ +L++F LVV++G ++E+ PL + + + G++PY L++ GRDIY
Sbjct: 1 MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPASGVKPYNALQVAGRDIY 60
Query: 64 IREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAW 123
IREGCY CHSQMIRP R E ERYGHYS+A ES+YD PFQWGSKRTGPDLARVGGRYSD W
Sbjct: 61 IREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGGRYSDEW 120
Query: 124 HVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFV 183
H HL+NP+ VVPES MP++ +LA+ +D + VG PY+ E IA A
Sbjct: 121 HRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKALRKVGTPYSDEEIAKAP---- 176
Query: 184 AQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
+ +E+DA+VAYLQ LG
Sbjct: 177 -------------------------EALANKSELDAVVAYLQGLG 196
gb|AAF42069.1| (AE002522) cytochrome c oxidase, subunit II [Neisseria
meningitidis]
Length = 203
Score = 206 bits (518), Expect = 2e-52
Identities = 104/225 (46%), Positives = 136/225 (60%), Gaps = 29/225 (12%)
Query: 4 MDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIY 63
M + E+ +L++F LVV++G ++E+ PL + + + G++PY L++ GRDIY
Sbjct: 1 MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAPGVKPYNALQVAGRDIY 60
Query: 64 IREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAW 123
IREGCY CHSQMIRP R E ERYGHYS+A ES+YD PFQWGSKRTGPDLARVGGRYSD W
Sbjct: 61 IREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGGRYSDEW 120
Query: 124 HVEHLINPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFV 183
H HL+NP+ VVPES MP++ +LA+ +D + VG PY+ E IA A
Sbjct: 121 HRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKALRKVGTPYSDEEIAKAP---- 176
Query: 184 AQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
+ +E+DA+VAYLQ LG
Sbjct: 177 -------------------------EALANKSELDAVVAYLQGLG 196
pir||H71969 cytochrome oxidase (cbb3-type) - Helicobacter pylori (strain J99)
>gi|4154643|gb|AAD05712.1| (AE001452) Cytochrome oxidase
(CBB3-TYPE) [Helicobacter pylori J99]
Length = 232
Score = 170 bits (426), Expect = 1e-41
Identities = 97/227 (42%), Positives = 133/227 (57%), Gaps = 18/227 (7%)
Query: 10 LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCY 69
LEKN + V +I G+VEI P F+ + +EG+RPYT LE GR IYI+EGCY
Sbjct: 5 LEKNPFFFTLAFIFVFSIAGLVEILPNFF--KSARPIEGLRPYTVLETAGRQIYIQEGCY 62
Query: 70 VCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVEHLI 129
CHSQ+IRP + EV+RYG YSL+ E YDRPF WGSKR GPDL RVG + WH +H++
Sbjct: 63 HCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHML 122
Query: 130 NPQSVVPESVMPSYGYL--AKVPLDSTWIEDRVSTDAFVGVPYTSE------MIASAKAD 181
+P+SVVP S+MP+Y +L K D+ + E F GVPY +E + AK
Sbjct: 123 DPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF-GVPYDTENGVKLGNVEEAKKA 181
Query: 182 FVAQADPNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
++ +A + A +K + + + + E+ AL+AYL LG
Sbjct: 182 YLEEA------KKITADMKDKRVLEAIE-RGEVLEIVALIAYLNSLG 221
pir||A64538 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Helicobacter pylori
(strain 26695) >gi|2313232|gb|AAD07215.1| (AE000536)
cytochrome c oxidase, monoheme subunit, membrane-bound
(fixO) [Helicobacter pylori 26695]
Length = 232
Score = 169 bits (424), Expect = 2e-41
Identities = 95/221 (42%), Positives = 129/221 (57%), Gaps = 6/221 (2%)
Query: 10 LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCY 69
LEKN + V I G+VEI P F+ + +EG+RPYT LE GR IYI+EGCY
Sbjct: 5 LEKNPFFFTLAFIFVFAIAGLVEILPNFF--KSARPIEGLRPYTVLETAGRQIYIQEGCY 62
Query: 70 VCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVEHLI 129
CHSQ+IRP + EV+RYG YSL+ E YDRPF WGSKR GPDL RVG + WH +H+
Sbjct: 63 HCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMF 122
Query: 130 NPQSVVPESVMPSYGYL--AKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFVAQAD 187
+P+SVVP S+MP+Y +L K D+ + E F GVPY +E + A+
Sbjct: 123 DPKSVVPHSIMPAYKHLFTKKSDFDTAYAEALTQKKVF-GVPYDTENGVKLGSVEEAKKA 181
Query: 188 PNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
++ + A +K + + + + E+ AL+AYL LG
Sbjct: 182 YLEEAKKITADMKDKRVLEAIE-RGEVLEIVALIAYLNSLG 221
emb|CAB73911.1| (AL139078) cb-type cytochrome C oxidase subunit II [Campylobacter
jejuni]
Length = 221
Score = 167 bits (419), Expect = 8e-41
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 4/219 (1%)
Query: 10 LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCY 69
LEKN + F+V+ GIVE+ P F EN +EG +PYT L+L GR +YI++ C
Sbjct: 5 LEKNPFFFAVAVFVVIAYAGIVEVLPNF-AENA-RPIEGKKPYTVLQLAGRAVYIKDSCN 62
Query: 70 VCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVEHLI 129
CHSQ+IRP + E +RYG YS++ E YDRPF WGSKRTGPDLARVG + WH H+
Sbjct: 63 ACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTGPDLARVGNYRTADWHENHMW 122
Query: 130 NPQSVVPESVMPSYGYLAKVPLD-STWIEDRVSTDAFVGVPYTSEMIASAKADFVAQADP 188
+P SVVP+S+MPSY ++ K D T + ++ VPY +E + AQA+
Sbjct: 123 DPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVFNVPYDAENGTKLGSWEDAQAEV 182
Query: 189 NADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVL 227
A++ ++ + +++ + + E+ AL+AYL L
Sbjct: 183 KAEAQAIV-DQMKNQEVKDAFAKGEIKEIVALIAYLNSL 220
dbj|BAA33527.1| (AB018105) cb-type cytochrome c oxidase subunit II [Helicobacter
pylori]
Length = 232
Score = 166 bits (415), Expect = 2e-40
Identities = 94/221 (42%), Positives = 128/221 (57%), Gaps = 6/221 (2%)
Query: 10 LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCY 69
LEKN + V I G+VEI P F+ + +EG+RPYT LE G IYI+EGCY
Sbjct: 5 LEKNPFFFTLAFIFVFAIAGLVEILPNFF--KSARPIEGLRPYTVLETAGWQIYIQEGCY 62
Query: 70 VCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVEHLI 129
CHSQ+IRP + EV+RYG YSL+ E YDRPF WGSKR GPDL RVG + WH +H+
Sbjct: 63 HCHSQIIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMF 122
Query: 130 NPQSVVPESVMPSYGYL--AKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFVAQAD 187
+P+SVVP S+MP+Y +L K D+ + E F GVPY +E + A+
Sbjct: 123 DPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF-GVPYDTENGVKLGSVEEAKKA 181
Query: 188 PNADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
++ + A +K + + + + E+ AL+AYL LG
Sbjct: 182 YLEEAKKITADMKDKRVLEAIE-RGEVLEIVALIAYLNSLG 221
dbj|BAA89394.1| (AB025342) ORF20 [Moritella marina]
Length = 205
Score = 144 bits (360), Expect = 7e-34
Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 29/219 (13%)
Query: 10 LEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCY 69
+ K+ + +VV V + P F+ N ++++ +PYT LEL GRD+Y+ EGC
Sbjct: 5 ISKSVMAFITITTVVVLFSFFVWVFPGFFFTNDLKEITTAKPYTALELAGRDVYMAEGCV 64
Query: 70 VCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPDLARVGGRYSDAWHVEHLI 129
CH+QM+R + E +RYG + + +Y+ F W S+RTGPDL +G +Y+ WH +HLI
Sbjct: 65 ACHTQMVRNLEPERKRYGRPNKMEDDVYEFNFLWSSQRTGPDLTNIGLKYTQGWHKQHLI 124
Query: 130 NPQSVVPESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFVAQADPN 189
NPQ+VVP S+MP Y +L + L+ + + +GVPYT I ++ +
Sbjct: 125 NPQAVVPASIMPQYPWLFEKQLNVGHVIASMKAMKKLGVPYTDTQIENSSS--------- 175
Query: 190 ADSTTLLAGYGEKVNIRNFDGQPGLTEMDALVAYLQVLG 228
KV G T+ DALVAYL LG
Sbjct: 176 ------------KVE--------GKTKGDALVAYLMSLG 194
gb|AAC02673.1| (AF039956) cytochrome c oxidase CcoO subunit [Sinorhizobium fredii]
Length = 137
Score = 96.3 bits (236), Expect = 2e-19
Identities = 41/80 (51%), Positives = 55/80 (68%)
Query: 52 YTPLELTGRDIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDRPFQWGSKRTGPD 111
YTPL+ GR IY+REGC+ CHSQ +RP+ E R+G + A E YD P +G++R GPD
Sbjct: 58 YTPLQKEGRAIYLREGCWYCHSQFVRPVTGETRRWGPVTEAGEFAYDVPHLFGTRRIGPD 117
Query: 112 LARVGGRYSDAWHVEHLINP 131
L RVG ++SD WH+ H +P
Sbjct: 118 LMRVGLKFSDEWHLAHFWDP 137
pir||A54234 cytochrome-c oxidase (EC 1.9.3.1) fixO chain - Rhodobacter
sphaeroides (fragment)
Length = 29
Score = 39.1 bits (89), Expect = 0.042
Identities = 20/29 (68%), Positives = 24/29 (81%), Gaps = 1/29 (3%)
Query: 3 IMDKHHVLEKNATLLLIFAFLVVTIGGIV 31
I+ KH +LE NATLL IF+F VVTIGG+V
Sbjct: 2 ILAKHKILETNATLL-IFSFTVVTIGGLV 29
gb|AAF25828.1|AF187306_1 (AF187306) putative transmembrane protein [Mycobacterium smegmatis]
Length = 692
Score = 34.0 bits (76), Expect = 1.4
Identities = 31/117 (26%), Positives = 47/117 (39%), Gaps = 5/117 (4%)
Query: 25 VTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCYVCHSQMIRPMRDEVE 84
+TI +V + + YL K + +T L RDI + C + Q+ RP D V
Sbjct: 574 MTIDALVWVPRMLYLYGESNKGLPEQFFTTTVLL-RDIAVIALCALVIRQIYRPELDLVR 632
Query: 85 RYGHYSLAAESMYDR----PFQWGSKRTGPDLARVGGRYSDAWHVEHLINPQSVVPE 137
+G +YDR P +W R P +RV + A + PQ V +
Sbjct: 633 WHGRIDDPTGGIYDRAPDSPPKWLPDRLRPTASRVRAERASAAGISDQTRPQRTVDD 689
pir||D54235 cb-type cytochrome-c oxidase 32K chain - Rhodobacter capsulatus
(fragment) >gi|545943|gb|AAB30225.1| cb-type cytochrome
c oxidase 32 kda subunt, cyt cb=fixO product homolog
[Rhodobacter capsulatus, pMT0-404/MT-RBC1 cells, Peptide
Partial, 19 aa, segment 2 of 4]
Length = 19
Score = 33.2 bits (74), Expect = 2.4
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 119 YSDAWHVEHLINPQSVVP 136
Y DAWHVEHL NPQ P
Sbjct: 1 YHDAWHVEHLSNPQXSGP 18
pir||C54235 cb-type cytochrome c oxidase 32K chain fixO - Rhodobacter
capsulatus (fragment) >gi|545941|gb|AAB30223.1| cb-type
cytochrome c oxidase 32 kda subunt, cyt cb=fixO product
homolog [Rhodobacter capsulatus, pMT0-404/MT-RBC1
cells, Peptide Partial, 20 aa, segment 1 of 4]
Length = 20
Score = 32.8 bits (73), Expect = 3.1
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 3 IMDKHHVLEKNATLLLIF 20
IMDK VLEKNATLLLIF
Sbjct: 3 IMDKXXVLEKNATLLLIF 20
pir||F54235 cb-type cytochrome-c oxidase 32K chain - Rhodobacter capsulatus
(fragment) >gi|545947|gb|AAB30229.1| cb-type cytochrome
c oxidase 32 kda subunt, cyt cb=fixO product homolog
[Rhodobacter capsulatus, pMT0-404/MT-RBC1 cells, Peptide
Partial, 18 aa, segment 4 of 4]
Length = 18
Score = 32.1 bits (71), Expect = 5.4
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 180 ADFVAQADPNADSTT 194
ADFVAQADPNADS T
Sbjct: 1 ADFVAQADPNADSAT 15
emb|CAA67340.1| (X98808) peroxidase ATP3a [Arabidopsis thaliana]
Length = 331
Score = 31.3 bits (69), Expect = 9.2
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 137 ESVMPSYGYLAKVPLDSTWIEDRVSTDAFVGVPYTSEMIASAKADFVAQADPNADSTTLL 196
++V+ + G +VPL ++ R+S + V +P S+ +A K DF A+ D TL+
Sbjct: 138 DAVVLTGGQRWEVPLGR--LDGRISQASDVNLPGPSDSVAKQKQDFAAKTLNTLDLVTLV 195
Query: 197 AGY 199
G+
Sbjct: 196 GGH 198
Database: nr
Posted date: Apr 7, 2000 10:55 PM
Number of letters in database: 154,329,450
Number of sequences in database: 492,152
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73115866
Number of Sequences: 492152
Number of extensions: 3011545
Number of successful extensions: 7975
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7928
Number of HSP's gapped (non-prelim): 31
length of query: 242
length of database: 154,329,450
effective HSP length: 53
effective length of query: 189
effective length of database: 128,245,394
effective search space: 24238379466
effective search space used: 24238379466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 69 (31.3 bits)
