BLAST Search Results

BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 955256401-25540-4705

Query= (297 letters) Database: nr 492,152 sequences; 154,329,450 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs

Distribution of 106 Blast Hits on the Query Sequence



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S49348  cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ...   623  e-178
gb|AAC46111.1|  (AF016223) di-heme cytochrome cp [Rhodobacte...   585  e-166
gb|AAB02559.1|  (U58092) cbb3-type cytochrome c oxidase CcoP...   366  e-100
pir||S77598  cytochrome-c oxidase (EC 1.9.3.1) type cbb3 cha...   348  3e-95
emb|CAA52432.1|  (X74410) fixP [Azorhizobium caulinodans]         279  2e-74
pir||D55582  cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ...   275  3e-73
pir||S39991  cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ...   265  5e-70
emb|CAB02452.1|  (Z80340) FixPc [Rhizobium leguminosarum]         254  8e-67
pir||D47468  cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ...   252  2e-66
gb|AAC72074.1|  (AF054871) cytcbb3 cytochrome c oxidase CytP...   245  4e-64
gb|AAC15890.1|  (U76906) di-heme cytochrome c; FixP [Rhizobi...   242  4e-63
dbj|BAA75505.1|  (AB024290) cb-type cytochrome c oxidase Cco...   233  2e-60
gb|AAF42068.1|  (AE002522) cytochrome c oxidase, subunit III...   178  7e-44
emb|CAB85197.1|  (AL162757) putative cytochrome c [Neisseria...   178  7e-44
emb|CAA04804.1|  (AJ001522) FixP protein [Rhizobium legumino...   174  8e-43
gb|AAC44983.1|  (AF202779) CcoP [Rhodobacter sphaeroides]         161  1e-38
dbj|BAA89395.1|  (AB025342) ORF21 [Moritella marina]              129  3e-29
gb|AAB58267.1|  (U90521) cbb3-type cytochrome oxidase compon...   103  2e-21
emb|CAB73909.1|  (AL139078) cb-type cytochrome C oxidase sub...    76  3e-13
dbj|BAA33529.1|  (AB018105) cb-type cytochrome c oxidase sub...    68  1e-10
pir||B71970  cytochrome oxidase (cbb3-type) - Helicobacter p...    66  6e-10
pir||C64538  cytochrome-c oxidase (EC 1.9.3.1) chain fixP - ...    61  1e-08
pir||T35532  qcrC protein - Streptomyces coelicolor >gi|4539...    46  4e-04
emb|CAB72530.1|  (AL139074) putative cytochrome c [Campyloba...    44  0.002
sp|Q10386|QCRC_MYCTU  UBIQUINOL-CYTOCHROME C REDUCTASE CYTOC...    44  0.002
sp|O69583|QCRC_MYCLE  UBIQUINOL-CYTOCHROME C REDUCTASE CYTOC...    43  0.003
pir||H54235  cb-type cytochrome-c oxidase 28K chain - Rhodob...    43  0.004
sp|P11448|CYC6_BRYMA  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    42  0.008
gb|AAB34245.1|  cytochrome cd1-nitrite reductase [Paracoccus...    42  0.008
sp|Q47945|CYCA_GLUSU  ALCOHOL DEHYDROGENASE CYTOCHROME C SUB...    41  0.011
sp|P24474|NIRS_PSEAE  NITRITE REDUCTASE PRECURSOR (CYTOCHROM...    41  0.011
pdb|1NIR|A  Chain A, Oxydized Nitrite Reductase From Pseudom...    41  0.014
prf||2009317B  alcohol dehydrogenase [Acetobacter aceti]           41  0.018
gb|AAC21674.1|  (AF002222) PvcD [Pseudomonas aeruginosa]           41  0.018
sp|P08197|CYC6_CHLRE  CYTOCHROME C6 PRECURSOR (CYTOCHROME C5...    41  0.018
pir||B49340  membrane-bound alcohol dehydrogenase (EC 1.1.-....    41  0.018
sp|Q51700|NIRS_PARDE  NITRITE REDUCTASE PRECURSOR (CYTOCHROM...    40  0.024
sp|P72181|NIRS_PARDT  NITRITE REDUCTASE PRECURSOR (CYTOCHROM...    40  0.032
pdb|1AOF|A  Chain A, Cytochrome Cd1 Nitrite Reductase, Reduc...    40  0.032
sp|P29899|CYCL_PARDE  CYTOCHROME C-L PRECURSOR (CYTOCHROME C...    40  0.032
pdb|1CYJ|     Cytochrome C6 >gi|1310884|pdb|1CYI|  Cytochrom...    40  0.032
sp|Q56247|C551_BACP3  CYTOCHROME C-551 PRECURSOR (C551) >gi|...    40  0.032
pdb|2MTA|C  Chain C, Methylamine Dehydrogenase (E.C.1.4.99.3...    40  0.032
pir||C75521  cytochrome-related protein - Deinococcus radiod...    39  0.041
sp|O30881|CYC6_SYNP2  CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC...    39  0.054
gb|AAA33081.1|  (J02774) pre-apocytochrome c552 [Chlamydomon...    39  0.054
sp|Q09099|CYC6_MONBR  CYTOCHROME C6 (CYTOCHROME C552) >gi|47...    39  0.054
pir||S77923  cytochrome c6 - green alga (Scenedesmus obliquus)     39  0.071
pdb|1A2S|     The Solution Nmr Structure Of Oxidized Cytochr...    38  0.093
gb|AAD00004.1|  (U39811) CytM [Synechococcus PCC7942]              38  0.093
emb|CAB84197.1|  (AL162754) putative cytochrome C [Neisseria...    38  0.093
gb|AAF41130.1|  (AE002426) cytochrome, putative [Neisseria m...    38  0.093
pir||A23711  cytochrome-c oxidase (EC 1.9.3.1) chain II/c pr...    38  0.12
sp|P14774|CYCL_METEX  CYTOCHROME C-L PRECURSOR >gi|78067|pir...    38  0.12
pir||T31449  diheme cytochrome-c oxidase (EC 1.9.3.-) petA -...    38  0.16
dbj|BAA92379.1|  (AB039821) sorbitol dehydrogenase cytochrom...    38  0.16
pir||C69597  cytochrome c551 cccB - Bacillus subtilis >gi|26...    37  0.21
emb|CAA62740.1|  (X91394) cytochrome cd1 nitrite reductase [...    37  0.21
prf||2009331A  nitrite reductase [Paracoccus denitrificans]        37  0.21
gb|AAF61450.1|AF139113_3  (AF139113) c-type cytochrome SoxD ...    37  0.21
dbj|BAA23274.1|  (AB004097) cytochrome CL [Hyphomicrobium me...    37  0.21
gb|AAD00299.1|  (U79185) CytM [Prochlorothrix hollandica]          37  0.27
gb|AAF21262.1|AF068066_3  (AF068066) cytochrome c subunit II...    36  0.36
sp|P00117|CYC6_PLEBO  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    36  0.36
sp|P00107|CYC6_PAVLU  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    36  0.47
sp|P00112|CYC6_MICAE  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    36  0.47
sp|P00123|C555_CHLLT  CYTOCHROME C-555 (C555) >gi|65574|pir|...    36  0.62
sp|Q03318|CYCA_ACEPO  ALCOHOL DEHYDROGENASE CYTOCHROME C SUB...    36  0.62
sp|P46445|CYC6_SYNY3  CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC...    35  0.81
emb|CAB51077.1|  (AJ130725) cytochrome c6 precursor [Euglena...    35  0.81
emb|CAA55825.1|  (X79242) cytochrome [Paracoccus denitrificans]    35  0.81
sp|P00119|CYC6_EUGGR  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    35  0.81
sp|P80091|C550_BACHA  CYTOCHROME C-550 (C550) >gi|285256|pir...    35  1.1
emb|CAB83630.1|  (AL162752) adhesin [Neisseria meningitidis]       34  1.4
gb|AAD31038.1|AF142582_2  (AF142582) adhesin MafA [Neisseria...    34  1.4
pir||G75531  cytochrome c family protein - Deinococcus radio...    34  1.8
sp|Q51702|NIRC_PARDE  C-TYPE CYTOCHROME C55X PRECURSOR >gi|4...    34  1.8
sp|Q41346|CYC_STELP  CYTOCHROME C >gi|440586|emb|CAA79708.1|...    33  3.1
dbj|BAA12828.1|  (D85547) cytochrome c oxidase subunit II [B...    33  3.1
sp|P22343|CYC6_EUGVI  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    33  3.1
sp|Q06529|CYSD_CHRVI  CYTOCHROME SUBUNIT OF SULFIDE DEHYDROG...    33  3.1
pir||CCIA6  cytochrome c6 - Microcystis aeruginosa                 33  3.1
gb|AAD10281.1|  (U39874) CytM [Anabaena variabilis]                33  4.1
gb|AAF12937.1|AF022186_59  (AF022186) unknown; cytochrome c5...    33  4.1
sp|P25935|CYC6_SYNP7  CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC...    33  4.1
pir||F75267  probable cytochrome C4 - Deinococcus radioduran...    33  4.1
pdb|1FCD|C  Chain C, Flavocytochrome C Sulfide Dehydrogenase...    32  5.3
sp|P28596|CYC6_ANASP  CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC...    32  5.3
sp|P24469|C550_BACSU  CYTOCHROME C-550 >gi|98266|pir||A37129...    32  5.3
gb|AAC43501.1|  (U35445) CcoP [Rhodobacter sphaeroides]            32  5.3
pir||CCPS4A  cytochrome c4 - Pseudomonas aeruginosa                32  5.3
sp|P12831|CYC_SARPE  CYTOCHROME C >gi|85278|pir||B25506 cyto...    32  7.0
pir||E75551  probable acyl-peptide hydrolase - Deinococcus r...    32  7.0
sp|P07497|CYC6_ANANI  CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (...    32  7.0
prf||1011182A  cytochrome c [Musca sp.]                            32  7.0
sp|P38587|C551_ECTHL  CYTOCHROME C-551 (C551) >gi|541278|pir...    32  7.0
dbj|BAA78856.1|  (AP000342) 98% identical to gp:ECU51859_5[T...    32  7.0
sp|P00036|CYC_LUCCU  CYTOCHROME C >gi|65480|pir||CCHFGB cyto...    32  7.0
gb|AAB07771.1|  (U51859) TraP [Escherichia coli]                   32  7.0
sp|P00035|CYC_HAEIR  CYTOCHROME C >gi|65479|pir||CCFHHF cyto...    32  7.0

 pir||S49348 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Rhodobacter
           capsulatus >gi|2126458|pir||S65861 ccoP protein -
           Rhodobacter capsulatus >gi|556816|emb|CAA56436.1|
           (X80134) CcoP [Rhodobacter capsulatus]
           Length = 297
           
 Score =  623 bits (1589), Expect = e-178
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60
           MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA
Sbjct: 1   MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60

Query: 61  TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120
           TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW
Sbjct: 61  TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120

Query: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180
           CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD
Sbjct: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180

Query: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
           ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD
Sbjct: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240

Query: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ
Sbjct: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
 gb|AAC46111.1| (AF016223) di-heme cytochrome cp [Rhodobacter capsulatus]
           Length = 297
           
 Score =  585 bits (1492), Expect = e-166
 Identities = 272/297 (91%), Positives = 286/297 (95%)

Query: 1   MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60
           MSKKPTTKKEVQTTGH WDGIEELNTPLPRWWLWTFYATI+WGVAYSIAMPAWPIF   A
Sbjct: 1   MSKKPTTKKEVQTTGHSWDGIEELNTPLPRWWLWTFYATIVWGVAYSIAMPAWPIFPSGA 60

Query: 61  TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120
           TPG+L SSTRADVEKDIAKFAEMNKAVE+KLVATD+TAIAADPELVTYTRNAGAAVFRTW
Sbjct: 61  TPGILRSSTRADVEKDIAKFAEMNKAVEDKLVATDVTAIAADPELVTYTRNAGAAVFRTW 120

Query: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180
           CAQCHGAGAGGNTGFPSLLDGDWLHGG+IETIYTN+KHGIRDPLDPDTL VANMPAHLTD
Sbjct: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGSIETIYTNIKHGIRDPLDPDTLPVANMPAHLTD 180

Query: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
           ELLEPAQID+VVQYVL+ISGQPADE +ATAGQQ+FA+NC SCHGEDAKG+VEMGAPNLTD
Sbjct: 181 ELLEPAQIDDVVQYVLKISGQPADEARATAGQQVFADNCVSCHGEDAKGMVEMGAPNLTD 240

Query: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           GIWLYGGD  T+T+TIQ GRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ
Sbjct: 241 GIWLYGGDAKTITTTIQLGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
 gb|AAB02559.1| (U58092) cbb3-type cytochrome c oxidase CcoP subunit [Rhodobacter
           sphaeroides]
           Length = 290
           
 Score =  366 bits (929), Expect = e-100
 Identities = 178/299 (59%), Positives = 214/299 (71%), Gaps = 11/299 (3%)

Query: 1   MSKKPTTKK--EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSD 58
           MS KPT +K  E  TTGH WDGIEE + P+PRWWLWTFY TI+W + YSI  PAWP+ + 
Sbjct: 1   MSVKPTKQKPGEPPTTGHSWDGIEEFDNPMPRWWLWTFYVTIVWAIGYSILYPAWPLING 60

Query: 59  KATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFR 118
            AT GL+G STRADV++DI  FAE N  + ++LV TDLTAIAADP L+ Y  NAGAAVFR
Sbjct: 61  -ATNGLIGHSTRADVQRDIEAFAEANATIRQQLVNTDLTAIAADPNLLQYATNAGAAVFR 119

Query: 119 TWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHL 178
           T C QCHG+GA GN G+P+LLD DWL GG IE+I+T V HGIR+  D D    + MP   
Sbjct: 120 TNCVQCHGSGAAGNVGYPNLLDDDWLWGGDIESIHTTVTHGIRNTTD-DEARYSEMPRFG 178

Query: 179 TDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNL 238
            D LL+  QI +VV+YVLQISGQ  D   +  G  IFA+NCA+CHGED  G  ++GAPNL
Sbjct: 179 ADGLLDSTQISQVVEYVLQISGQDHDAALSAEGATIFADNCAACHGEDGTGSRDVGAPNL 238

Query: 239 TDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           TD IWLYGGD AT+T T+ Y R GVMP+W+        RL+EA IR+VA YVH LGGG+
Sbjct: 239 TDAIWLYGGDRATVTETVTYARFGVMPNWN-------ARLTEADIRSVAVYVHGLGGGE 290
 pir||S77598 cytochrome-c oxidase (EC 1.9.3.1) type cbb3 chain fixP - Paracoccus
           denitrificans >gi|1002881|gb|AAC44519.1| (U34353) CcoP
           [Paracoccus denitrificans]
           Length = 348
           
 Score =  348 bits (884), Expect = 3e-95
 Identities = 170/288 (59%), Positives = 204/288 (70%), Gaps = 9/288 (3%)

Query: 10  EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
           EV +TGH WDGIEE + PLPRWWLWTFYATI+WGV Y IA PA P+ +  AT GLLG + 
Sbjct: 70  EVPSTGHSWDGIEEYDNPLPRWWLWTFYATIVWGVLYLIAYPAIPLVNG-ATQGLLGQNY 128

Query: 70  RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
           R+DV  +I +F E N  ++ KLV T L  IAADPEL  YT NAGAA+FRTWCAQCHG+GA
Sbjct: 129 RSDVAAEIQRFNEANAPIQAKLVETPLEEIAADPELANYTANAGAAIFRTWCAQCHGSGA 188

Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
           GG TG+PSLLD DWL GG +E I+T V HGIRDP D DT   + MP    D LLE AQI 
Sbjct: 189 GGATGYPSLLDNDWLWGGTLEEIHTTVMHGIRDPKDADT-RYSEMPRFGIDGLLENAQIS 247

Query: 190 EVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDV 249
           +VV +VL++ G P D   A  G ++FA+NC+SCH ED  G    GAP+LTD +WLYG D 
Sbjct: 248 QVVNHVLELGGLPHDAALAAEGVEVFADNCSSCHAEDGTGDRAQGAPDLTDAVWLYGSDP 307

Query: 250 ATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           AT+T  ++ G  GVMP+W+        RLSEA I AVA+YVHSLGGG+
Sbjct: 308 ATITRIVRDGPFGVMPAWT-------GRLSEADIVAVAAYVHSLGGGE 348
 emb|CAA52432.1| (X74410) fixP [Azorhizobium caulinodans]
           Length = 293
           
 Score =  279 bits (706), Expect = 2e-74
 Identities = 144/286 (50%), Positives = 175/286 (60%), Gaps = 13/286 (4%)

Query: 13  TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
           TTGH+WDGI+ELN PLPRWWLWTFYATIIW   Y +A PAWP+ S+  T G+LG ++R+ 
Sbjct: 20  TTGHEWDGIQELNNPLPRWWLWTFYATIIWAFGYWVAYPAWPLVSNY-TSGVLGWNSRSA 78

Query: 73  VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
           V + I+   ++  A   KL    L  I  +PEL++  R  G   F   CA CHGAG GG 
Sbjct: 79  VVEQISDLQKLRAASSAKLANVPLEDIEKNPELLSLARAEGKVAFADNCAPCHGAGGGGA 138

Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
            GFP+L D DWL GG +  I   + HGIR   D       NM A     +L  A I  V 
Sbjct: 139 KGFPNLNDDDWLWGGTLAQIQQTITHGIRSGDDEGHQ--GNMLAF--GSILSKADISNVA 194

Query: 193 QYVLQISGQ-PADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
            YV  +SG  P D   A  G +IFA NCA+CHGE+ KG  E+G+ NLTDGIWLYGGD AT
Sbjct: 195 DYVRSLSGAAPGDTPAAKKGAEIFAANCATCHGENGKGNQELGSKNLTDGIWLYGGDKAT 254

Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           +  TI  GRGGVMP+W        PRLS   I+A+  YVH+LGGGQ
Sbjct: 255 IVQTITNGRGGVMPAWG-------PRLSPTTIKALTVYVHTLGGGQ 293
 pir||D55582 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Azorhizobium
           caulinodans
           Length = 292
           
 Score =  275 bits (697), Expect = 3e-73
 Identities = 144/286 (50%), Positives = 175/286 (60%), Gaps = 14/286 (4%)

Query: 13  TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
           TTGH+WDGI+ELN PLPRWWLWTFYATIIW   Y +A PAWP+ S+  T G+LG ++R+ 
Sbjct: 20  TTGHEWDGIQELNNPLPRWWLWTFYATIIWAFGY-VAYPAWPLVSNY-TSGVLGWNSRSA 77

Query: 73  VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
           V + I+   ++  A   KL    L  I  +PEL++  R  G   F   CA CHGAG GG 
Sbjct: 78  VVEQISDLQKLRAASSAKLANVPLEDIEKNPELLSLARAEGKVAFADNCAPCHGAGGGGA 137

Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
            GFP+L D DWL GG +  I   + HGIR   D       NM A     +L  A I  V 
Sbjct: 138 KGFPNLNDDDWLWGGTLAQIQQTITHGIRSGDDEGHQ--GNMLAF--GSILSKADISNVA 193

Query: 193 QYVLQISGQ-PADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
            YV  +SG  P D   A  G +IFA NCA+CHGE+ KG  E+G+ NLTDGIWLYGGD AT
Sbjct: 194 DYVRSLSGAAPGDTPAAKKGAEIFAANCATCHGENGKGNQELGSKNLTDGIWLYGGDKAT 253

Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           +  TI  GRGGVMP+W        PRLS   I+A+  YVH+LGGGQ
Sbjct: 254 IVQTITNGRGGVMPAWG-------PRLSPTTIKALTVYVHTLGGGQ 292
 pir||S39991 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Rhizobium meliloti
           >gi|49411|emb|CAA79904.1| (Z21854) FixP [Sinorhizobium
           meliloti]
           Length = 289
           
 Score =  265 bits (669), Expect = 5e-70
 Identities = 126/287 (43%), Positives = 184/287 (63%), Gaps = 11/287 (3%)

Query: 11  VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
           V+TTGH+WDGI ELN P+PRWW+++FYATIIW + Y+IA P+WP+ ++ AT G+LG S+R
Sbjct: 14  VETTGHEWDGIRELNNPMPRWWVYSFYATIIWAIGYAIAYPSWPMLTE-ATKGMLGYSSR 72

Query: 71  ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
           A+V  ++A          E++ ++ +  I A+P+L  +  +AGA+ F+  CAQCHG+GA 
Sbjct: 73  AEVSVELAAAKAAQAGNLEQIASSSVEEIIANPQLQQFAVSAGASAFKVNCAQCHGSGAA 132

Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDE 190
           G  GFP+L D DWL GG  + IY  + HG+R   D +T  V+ MP     ++L P  + +
Sbjct: 133 GGQGFPNLNDDDWLWGGKPQEIYQTIAHGVRHAPDGET-RVSEMPPF--GDMLTPELMQQ 189

Query: 191 VVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVA 250
              YV+ ++  P+       G+Q+FA+NCASCHG DAKG  EMGAPNL D IWL G    
Sbjct: 190 TAAYVVSLTQAPSQPHLVQQGKQVFADNCASCHGADAKGNREMGAPNLADAIWLKGEGEQ 249

Query: 251 TLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
            + + ++  + GVMP+W        PRL +  ++ +A +VHSLGGG+
Sbjct: 250 AVITQMKTPKHGVMPAW-------LPRLGDDTVKQLAVFVHSLGGGE 289
 emb|CAB02452.1| (Z80340) FixPc [Rhizobium leguminosarum]
           Length = 287
           
 Score =  254 bits (642), Expect = 8e-67
 Identities = 123/286 (43%), Positives = 177/286 (61%), Gaps = 11/286 (3%)

Query: 11  VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
           V+TTGH+WDGI ELN P+PRWW+WTFYATI+W + Y+IA PA P+ +D AT G+LG S+R
Sbjct: 12  VETTGHEWDGIRELNNPMPRWWVWTFYATIVWALGYAIAYPAIPMITD-ATKGMLGFSSR 70

Query: 71  ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
           A++++++ +       + + + A  +  I +D  L  +    GA+ F+  CA CHG+GA 
Sbjct: 71  AELQQNLDQAKASQTTLHDLIAAKTVHEIDSDSALREFAIAGGASAFKVNCATCHGSGAS 130

Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDE 190
           G  GFP+L D DWL GG ++ I   + HGIR   D DT   + MP     E+L+P Q  +
Sbjct: 131 GGPGFPNLNDDDWLWGGDLDAIQATIAHGIRFDGDTDTH-ASEMPPFA--EVLDPLQTRQ 187

Query: 191 VVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVA 250
           V  YV  ++  P+D   A AG+Q+F +NCA+CHG+DAKG  EMGAP+L D IWL      
Sbjct: 188 VAAYVWGLTNTPSDPGLAEAGKQVFVDNCAACHGDDAKGKAEMGAPDLADAIWLKARGED 247

Query: 251 TLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
            +   +   + GVMP+W+        RL +  ++ +  +VHSLGGG
Sbjct: 248 AIIRQVAAPKHGVMPAWA-------GRLGDTTVKELTIFVHSLGGG 286
 pir||D47468 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Bradyrhizobium
           japonicum >gi|152202|gb|AAA26206.1| (L07487)
           membrane-anchored protein [Bradyrhizobium japonicum]
           >gi|3021317|emb|CAA06282.1| (AJ005001) cbb3 oxidase,
           subunit III [Bradyrhizobium japonicum]
           Length = 290
           
 Score =  252 bits (638), Expect = 2e-66
 Identities = 132/286 (46%), Positives = 166/286 (57%), Gaps = 11/286 (3%)

Query: 13  TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
           TTGH+WDGI+ELNTPLPRWW+  FY TI+W + Y I  PAWP+ S   T GL G S+RAD
Sbjct: 15  TTGHEWDGIKELNTPLPRWWVICFYLTIVWAIGYWIVYPAWPLISSNTT-GLFGYSSRAD 73

Query: 73  VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
           V  ++A   ++       L A  L  +  DP L+   R  G  VF   CA CHG+G  G 
Sbjct: 74  VAVELANLEKIRGDKMAALGAASLADVEKDPALLALARAKGKTVFGDNCAPCHGSGGAGA 133

Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
            GFP+L D DWL GG ++ I   ++ G R            M A   D +L+  +I  V 
Sbjct: 134 KGFPNLNDDDWLWGGTLDQIMQTIQFGARS--GHAKTHEGQMLAFGKDGVLKGDEIVTVA 191

Query: 193 QYVLQISGQPADE-VKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
            YV  +SG P  +   A  G++IF ENC +CHG+  KG  EMGAPNLTD IWLYG D A 
Sbjct: 192 NYVRSLSGLPTRKGYDAAKGEKIFVENCVACHGDGGKGNQEMGAPNLTDKIWLYGSDEAA 251

Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           L  TI  GR GVMP+W       + RL  + I+A+A YVHSLGGG+
Sbjct: 252 LIETISQGRAGVMPAW-------EGRLDPSTIKAMAVYVHSLGGGK 290
 gb|AAC72074.1| (AF054871) cytcbb3 cytochrome c oxidase CytP subunit [Azospirillum
           brasilense]
           Length = 295
           
 Score =  245 bits (619), Expect = 4e-64
 Identities = 124/292 (42%), Positives = 171/292 (58%), Gaps = 13/292 (4%)

Query: 11  VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
           V+TTGH+WDG+ ELN PLP+WWL+ FY  I W + Y +  PAWP+     T GLLG S R
Sbjct: 12  VETTGHEWDGLRELNNPLPKWWLYIFYVCIAWSLVYYVLYPAWPL-GKSYTKGLLGYSQR 70

Query: 71  ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
            ++ + +A   +  +     + AT +  I  + +L+ +    G + F   CA CHGAG  
Sbjct: 71  EELVQKVADGKKAQEKYLTAIAATSVEDIQKNKDLLAFAMAGGRSYFNENCAACHGAGGQ 130

Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIR-DPLDPDTLLVANMPAHLTDELLEPAQID 189
           G  GFP+L D  WL GG    IY  ++HGIR D  D    +   M A   D +L   QI 
Sbjct: 131 GAKGFPTLADDVWLWGGTTADIYKTIQHGIRADDGDTRGTVGIGMTAFGRDGILNRDQIG 190

Query: 190 EVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGL----VEMGAPNLTDGIWLY 245
           +V +Y+L ++ +  D   A  G+ ++ ENCA+CHGE+A+G     +E+GAP L  G WLY
Sbjct: 191 QVAEYILSLNKRSTDAAAAEKGKTVYDENCAACHGENAQGSLAVGMEVGAPPLVTGNWLY 250

Query: 246 GGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           GGD ATL  TI  GR GVMP+WS        RL +A I+++A YVH+LGGG+
Sbjct: 251 GGDKATLVQTITNGRAGVMPAWS-------KRLDDATIKSLAVYVHNLGGGK 295
 gb|AAC15890.1| (U76906) di-heme cytochrome c; FixP [Rhizobium etli]
           Length = 287
           
 Score =  242 bits (610), Expect = 4e-63
 Identities = 125/297 (42%), Positives = 174/297 (58%), Gaps = 12/297 (4%)

Query: 1   MSKKPTTKKEV-QTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDK 59
           MS+K   +  V +TTGH+WDGI+ELN P+PRWW+WTFY TI+    Y+IA PA P+ +  
Sbjct: 1   MSQKHIDELSVAETTGHEWDGIQELNNPMPRWWIWTFYVTILCADPYAIAYPAIPMITS- 59

Query: 60  ATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRT 119
           AT G LG STRA++++D+           + + A  +  I ADP L  +    GA+ F+ 
Sbjct: 60  ATNGYLGYSTRAELQQDLNLAKSSQTEFHDLIAAKTVEEIDADPALRKFAIAGGASAFKV 119

Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
            CA CHG+GA G  GFP+L D DWL GG +  I   + HGIR   D D+   + MP    
Sbjct: 120 NCAPCHGSGASGGPGFPNLNDDDWLWGGDLNAIQATISHGIRFDGDTDS-HSSEMPPFA- 177

Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
             +LEP Q+ +V  +V  ++  P+D   A AG+Q+F +NCA CHGEDAKG VEMGAP+L 
Sbjct: 178 -GVLEPIQMKQVAAFVWGLTNTPSDVGLAAAGKQVFFDNCAPCHGEDAKGKVEMGAPDLA 236

Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
           D IWL       +   +   + GVMP+W+        RL +  +  + ++VH  GGG
Sbjct: 237 DAIWLKSRGEEPILRQVASPKHGVMPAWA-------ARLGDTTVNELTNFVHRFGGG 286
 dbj|BAA75505.1| (AB024290) cb-type cytochrome c oxidase CcoP subunit
           [Magnetospirillum magnetotacticum]
           Length = 286
           
 Score =  233 bits (588), Expect = 2e-60
 Identities = 113/285 (39%), Positives = 167/285 (57%), Gaps = 12/285 (4%)

Query: 13  TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
           TTGH+WDGI+ELNTPLP+WW++ F+AT++W V Y +A PAWP+ ++  T GLLG S+R +
Sbjct: 14  TTGHEWDGIKELNTPLPKWWVYVFWATVVWAVGYWVAYPAWPL-ANGFTKGLLGYSSRGE 72

Query: 73  VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
           ++ ++A   +   A   K+ A+D+  I  D +L+ Y    G   F   C  CHG G  G 
Sbjct: 73  LDNELAAQKKSRSAWLSKIEASDVAVIEKDKDLLRYAMAGGKIAFNENCGACHGVGGVGA 132

Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
            G+P+L D +WL GG +  I   +K G+R+         + MP    D +L+P QI  V 
Sbjct: 133 YGYPTLADDEWLWGGTLADIEQTIKFGVRNA--NANSRQSEMPKFGVDGVLKPEQISSVA 190

Query: 193 QYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATL 252
            YVL ++ +     K +AG+ ++AENCA CH ED  G+  +GAP L + IWLY G    +
Sbjct: 191 DYVLSLASKA--PAKGSAGETVYAENCAVCHAEDGSGMAAVGAPALNNQIWLYKGTKDAI 248

Query: 253 TSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
            + +   + G MP+WS        RL  + I+ +A YVH+LGGG+
Sbjct: 249 VAQVTKPKHGSMPAWS-------ERLDASTIKMLAVYVHNLGGGK 286
 gb|AAF42068.1| (AE002522) cytochrome c oxidase, subunit III [Neisseria
           meningitidis]
           Length = 365
           
 Score =  178 bits (446), Expect = 7e-44
 Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 29/287 (10%)

Query: 3   KKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATP 62
           K+P   +EVQTTGH+WDGI E + PLPRWW W    T ++G+ Y +  P    +      
Sbjct: 38  KRPKKGEEVQTTGHEWDGIAEYDNPLPRWWFWLCVLTWLFGIGYLVMYPGVGDYK----- 92

Query: 63  GLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCA 122
           GLL  ++    EK++ K  E    +  K     +  +A DP+     +N    +F T+C 
Sbjct: 93  GLLKWTSHNQYEKEVKKADEQYGKLYAKFADMPIEKVAKDPQAKQIAQN----LFNTYCI 148

Query: 123 QCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDEL 182
           QCHG+ A G+ GFP+L D DWL GG  + I+  ++ G           VA MPA      
Sbjct: 149 QCHGSDAKGSKGFPNLTDSDWLWGGDPDKIHETIEKG----------RVATMPA--WGPA 196

Query: 183 LEPAQIDEVVQYVLQIS---GQPADEVKATAGQQIFA---ENCASCHGEDAKGLVEMGAP 236
           L    + +V  YV+ +S   GQ  DE +A  GQ +F+    NC +CHG+  +G+  +G P
Sbjct: 197 LGEEGVKDVAHYVMSLSKPEGQ-YDEERAARGQALFSGPPANCFTCHGDKGQGIQGLG-P 254

Query: 237 NLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQI 283
           NLTD +WL+GG   ++  TI  GR   MP+W    D  K  +  A +
Sbjct: 255 NLTDDVWLWGGTQKSIIETITNGRSSQMPAWGHFLDKDKLHIMTAYV 301
 emb|CAB85197.1| (AL162757) putative cytochrome c [Neisseria meningitidis]
           Length = 365
           
 Score =  178 bits (446), Expect = 7e-44
 Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 29/287 (10%)

Query: 3   KKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATP 62
           K+P   +EVQTTGH+WDGI E + PLPRWW W    T ++G+ Y +  P    +      
Sbjct: 38  KRPKKGEEVQTTGHEWDGIAEYDNPLPRWWFWLCVLTWLFGIGYLVMYPGVGDYK----- 92

Query: 63  GLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCA 122
           GLL  ++    EK++ K  E    +  K     +  +A DP+     +N    +F T+C 
Sbjct: 93  GLLKWTSHNQYEKEVKKADEQYGKLYAKFADMPIEKVAKDPQAKQIAQN----LFNTYCI 148

Query: 123 QCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDEL 182
           QCHG+ A G+ GFP+L D DWL GG  + I+  ++ G           VA MPA      
Sbjct: 149 QCHGSDAKGSKGFPNLTDSDWLWGGDPDKIHETIEKG----------RVATMPA--WGPA 196

Query: 183 LEPAQIDEVVQYVLQIS---GQPADEVKATAGQQIFA---ENCASCHGEDAKGLVEMGAP 236
           L    + +V  YV+ +S   GQ  DE +A  GQ +F+    NC +CHG+  +G+  +G P
Sbjct: 197 LGEEGVKDVAHYVMSLSKPEGQ-YDEERAARGQALFSGPPANCFTCHGDKGQGIQGLG-P 254

Query: 237 NLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQI 283
           NLTD +WL+GG   ++  TI  GR   MP+W    D  K  +  A +
Sbjct: 255 NLTDDVWLWGGTQKSIIETITNGRSSQMPAWGHFLDKDKLHIMTAYV 301
 emb|CAA04804.1| (AJ001522) FixP protein [Rhizobium leguminosarum]
           Length = 228
           
 Score =  174 bits (437), Expect = 8e-43
 Identities = 90/237 (37%), Positives = 136/237 (56%), Gaps = 10/237 (4%)

Query: 60  ATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRT 119
           AT G+LG S+RA++++++ +       + + + A  +  I +D  L  +    GA+ F+ 
Sbjct: 1   ATKGMLGFSSRAELQQNLDQAKVSQTTLRDLIAAKTVHEIDSDSALREFAVAGGASAFKV 60

Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
            CA CHG+GA G  GFP+L D DWL GG ++ I   + HGIR   D DT   + MP    
Sbjct: 61  NCAPCHGSGASGGPGFPNLNDDDWLWGGDLDAIQATIAHGIRFNEDTDTH-ASEMPPFA- 118

Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
            ++L+P Q  +V  YV  ++  P+D   A  G+Q+F +NCA+CHG+DAKG  EMGAP+L 
Sbjct: 119 -DVLDPLQTRQVAAYVWGLTNTPSDPGLAEDGKQVFVDNCAACHGDDAKGKAEMGAPDLA 177

Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
           D IWL       +T  +   + GVMP+W+        RL +  ++ +  +VHSLGGG
Sbjct: 178 DAIWLKARGEDAITRQVAAPKHGVMPAWA-------GRLGDTTVKELTIFVHSLGGG 227
 gb|AAC44983.1| (AF202779) CcoP [Rhodobacter sphaeroides]
           Length = 143
           
 Score =  161 bits (402), Expect = 1e-38
 Identities = 82/151 (54%), Positives = 102/151 (67%), Gaps = 8/151 (5%)

Query: 147 GAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPADEV 206
           G IE+I+T V HGIR+  + D    + MP    D LL+  QI +VV+YVLQISGQ  D  
Sbjct: 1   GDIESIHTTVTHGIRNTTE-DEARYSEMPRFGADGLLDSTQISQVVEYVLQISGQDHDAA 59

Query: 207 KATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPS 266
            +  G  IFA+NCA+CHGED  G  ++GAPNLTD IWLYGGD AT+T T+ Y R GVMP+
Sbjct: 60  LSAEGATIFADNCAACHGEDGTGSRDVGAPNLTDAIWLYGGDRATVTETVTYARFGVMPN 119

Query: 267 WSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
           W+        RL+EA IR+VA YVH LGGG+
Sbjct: 120 WN-------ARLTEADIRSVAVYVHGLGGGE 143
 Score = 39.1 bits (89), Expect = 0.054
 Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 2/48 (4%)

Query: 113 GAAVFRTWCAQCHGAGAGGN--TGFPSLLDGDWLHGGAIETIYTNVKH 158
           GA +F   CA CHG    G+   G P+L D  WL+GG   T+   V +
Sbjct: 64  GATIFADNCAACHGEDGTGSRDVGAPNLTDAIWLYGGDRATVTETVTY 111
 dbj|BAA89395.1| (AB025342) ORF21 [Moritella marina]
           Length = 488
           
 Score =  129 bits (322), Expect = 3e-29
 Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 40/294 (13%)

Query: 4   KPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPG 63
           + T   +   T  Q+DGI+E + P+P+ +   +    I  + Y +  P+   +      G
Sbjct: 28  RKTKTADSNKTVEQFDGIDEKDAPIPKVFFVAYLIAFIGAIVYVLLYPSLASWK-----G 82

Query: 64  LLGSSTRADVEKDIAKFAEMNKAVEEKLVA-TD---LTAIAADPELVTYTRNAGAAVFRT 119
            +G +   D    +AK  ++N  +   + A TD    T +  DP ++     +G ++F  
Sbjct: 83  FIGWTENDDAY--VAKSIDINNNINAIINANTDEQVFTLLQKDPLVL----QSGKSLFGD 136

Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
            C+ CHG  A G   +PSL+D DWL+GG+ + +YT + +G +            MPA   
Sbjct: 137 NCSACHGQDAKGQYNYPSLVDKDWLYGGSPQDVYTTIHNGRK----------GKMPAW-- 184

Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
             +L    IDE+ QYV +++  P    K+ A   +F  NC+SCHG++A+G   +GAPNLT
Sbjct: 185 KGVLSGKDIDELTQYVSELNKGP---FKSNA---LFDANCSSCHGKEAQGSHSVGAPNLT 238

Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
           + IWL+G   A +   I+ G    MP +         RLS  QI ++ SY+ SL
Sbjct: 239 NDIWLHGSTNADIKRNIENGMYNEMPDFG-------QRLSRNQILSLTSYIVSL 285
 gb|AAB58267.1| (U90521) cbb3-type cytochrome oxidase component FixP [Rhizobium
           leguminosarum bv. viciae]
           Length = 107
           
 Score =  103 bits (255), Expect = 2e-21
 Identities = 44/95 (46%), Positives = 67/95 (70%), Gaps = 1/95 (1%)

Query: 11  VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
           V+TTGH+WDGI ELN P+PRWW+WTFYATI+W + Y+IA PA P+ +D AT G+LG S+R
Sbjct: 12  VETTGHEWDGIRELNNPMPRWWVWTFYATIVWALGYAIAYPAIPMITD-ATKGMLGYSSR 70

Query: 71  ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPEL 105
           A++++++ +       + + + A  +  I +D  L
Sbjct: 71  AELQQNLDQAKASQTTLHDLIAAKTVHEIDSDSAL 105
 emb|CAB73909.1| (AL139078) cb-type cytochrome C oxidase subunit III [Campylobacter
           jejuni]
           Length = 287
           
 Score = 76.5 bits (185), Expect = 3e-13
 Identities = 80/298 (26%), Positives = 119/298 (39%), Gaps = 58/298 (19%)

Query: 8   KKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGS 67
           K E + + H WDGI E    +P  W   F+ TI+W + Y +    +P+ S  +       
Sbjct: 40  KGESELSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLW--GYPLNSFSSI-----G 92

Query: 68  STRADVEKDIAKFAEM--NKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCH 125
               +V     KF E   N + E+K+                     G  +F   C+ CH
Sbjct: 93  QYNEEVATHNTKFEEKFKNLSPEDKIAM-------------------GQNIFLVQCSACH 133

Query: 126 GAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEP 185
           G    G  G    L+  W   G+ E I   +KHG +    P   ++      + +E    
Sbjct: 134 GITGDGINGKAQNLN-IW---GSEEGIINVIKHGSKGMNFPGGEMLGAADLGVAEE---- 185

Query: 186 AQIDEVVQYV---LQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGI 242
             I  +  YV   L    + A+E     G++ +A  CA+CHGED KG   M  P+LT   
Sbjct: 186 -DIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA-TCAACHGEDGKGQDGM-FPDLTK-- 240

Query: 243 WLYGGDVATLTSTIQYGRG---GVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
               G  A +   +  G+    G MPS+        P L++ Q  AV  YV SL  G+
Sbjct: 241 ---YGSAAFVVDVLHSGKAGFIGTMPSF--------PTLNDIQKEAVGEYVISLSRGE 287
 dbj|BAA33529.1| (AB018105) cb-type cytochrome c oxidase subunit III [Helicobacter
           pylori]
           Length = 292
           
 Score = 67.9 bits (163), Expect = 1e-10
 Identities = 73/287 (25%), Positives = 114/287 (39%), Gaps = 44/287 (15%)

Query: 10  EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
           E+   GH  DGI E    +P  W+ +F  TI+W   Y      +P+ S     G      
Sbjct: 42  ELMENGHLIDGIGEFANNVPVGWIASFMCTIVWAFWYFFF--GYPLNSFSQI-GQYNEEV 98

Query: 70  RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
           +A  +K  AK+  + +                  ELV    + G  +F   C+QCHG  A
Sbjct: 99  KAHNQKFEAKWKNLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137

Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
            G  G    L    +  G  E I   +KHG +        L   MPA   DE    A   
Sbjct: 138 EGLHGSAQNL----VRWGKEEGIMDTIKHGSKGM----DYLAGEMPAMELDEKDAKAIAS 189

Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVEMGAPNLTDGIWLYGGD 248
            V+  +  +      ++    G+++F +  C  CHG D KGL E     L   +  YG +
Sbjct: 190 YVMAEISSVKKTKNPQL-IDKGKELFESMGCTGCHGNDGKGLQENQV--LAADLTTYGTE 246

Query: 249 --VATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
             +  + +  + G  G MPS+ +         S+ Q++A+  ++ SL
Sbjct: 247 NFLRNILTHGKKGNIGHMPSFKY------KNFSDLQVKALPEFIQSL 287
 pir||B71970 cytochrome oxidase (cbb3-type) - Helicobacter pylori (strain J99)
           >gi|4154645|gb|AAD05714.1| (AE001452) Cytochrome oxidase
           (CBB3-TYPE) [Helicobacter pylori J99]
           Length = 292
           
 Score = 65.6 bits (157), Expect = 6e-10
 Identities = 77/290 (26%), Positives = 118/290 (40%), Gaps = 50/290 (17%)

Query: 10  EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
           E+   GH  DGI E    +P  W+ +F   I+W   Y      +P+ S  +  G      
Sbjct: 42  ELMENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFF--GYPL-SSFSQIGQYNEEV 98

Query: 70  RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
           +A  +K  AK+  + +                  ELV    + G  +F   C+QCHG  A
Sbjct: 99  KAHNQKFEAKWKHLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137

Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
            G  G    L    L     E I   +KHG +    P       MPA   DE  +   I 
Sbjct: 138 DGLHGSAQNL----LRWDKEEGIMDTIKHGSKGMDYP----AGEMPAIEMDE-KDAKAIA 188

Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVE--MGAPNLTDGIWLYG 246
             V   L    +  +      G+++F +  CA CHG D KGL E  + A +LT     YG
Sbjct: 189 SYVMAELSSVKKTKNPQLIDKGKELFESMGCAGCHGNDGKGLQENQVFAADLT----TYG 244

Query: 247 GDVATLTSTIQYGRG---GVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
            + + L + + +G+    G MPS+ +         S+ Q++A+  ++ SL
Sbjct: 245 TE-SFLRNILTHGKKGNIGRMPSFKY------KNFSDLQVKALVEFIKSL 287
 pir||C64538 cytochrome-c oxidase (EC 1.9.3.1) chain fixP - Helicobacter pylori
           (strain 26695) >gi|2313233|gb|AAD07216.1| (AE000536)
           cytochrome c oxidase, diheme subunit, membrane-bound
           (fixP) [Helicobacter pylori 26695]
           Length = 286
           
 Score = 61.3 bits (146), Expect = 1e-08
 Identities = 74/282 (26%), Positives = 112/282 (39%), Gaps = 48/282 (17%)

Query: 10  EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
           E+   GH  DGI E    +P  W+ +F  TI+W   Y      +P+ S     G      
Sbjct: 42  ELVENGHLIDGIGEFANNVPVGWIASFMCTIVWAFWYFFF--GYPLNSFSQI-GQYNEEV 98

Query: 70  RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
           +A  +K  AK+  + +                  ELV    + G  +F   C+QCHG  A
Sbjct: 99  KAHNQKFEAKWKHLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137

Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
            G  G    L    +  G  E I   +KHG +        L   MPA   DE  +   I 
Sbjct: 138 EGLHGSAQNL----VRWGKEEGIMDTIKHGSKGM----DYLAGEMPAMELDE-KDAKAIA 188

Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVE--MGAPNLTDGIWLYG 246
             V   L    +  +      G+++F +  C  CHG D KGL E  + A +LT     YG
Sbjct: 189 SYVMAELSSVKKTKNPQLIDKGKELFESMGCTGCHGNDGKGLQENQVFAADLT----AYG 244

Query: 247 GD--VATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAV 286
            +  +  + +  + G  G MPS+ +         S+ Q++A+
Sbjct: 245 TENFLRNILTHGKKGNIGHMPSFKY------KNFSDLQVKAL 280
 pir||T35532 qcrC protein - Streptomyces coelicolor >gi|4539219|emb|CAB39877.1|
           (AL049497) cytochrome c heme-binding subunit
           [Streptomyces coelicolor A3(2)]
           Length = 269
           
 Score = 46.1 bits (107), Expect = 4e-04
 Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 37/207 (17%)

Query: 101 ADPELVTYTRNAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGI 160
           AD    +   + G  ++   CA CHG G  G +  PSL+      G     +   V  G 
Sbjct: 40  ADESAQSLAIDEGKKLYAVGCASCHGTGGQGTSDGPSLV------GVGAAAVDFQVGTGR 93

Query: 161 RDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA---------DEVKATAG 211
                P     A +P      +   A+ID++  Y+  +   PA         +      G
Sbjct: 94  MPAQQPG----AQVPKKKV--IYSQAEIDQLAAYIASLGAGPAIPSEEKYGPEGADIAKG 147

Query: 212 QQIFAENCASCHGEDAKGLVEMGAPNLTDGIW---LYGGDVATLTSTIQYGRGGVMPSWS 268
            ++F  NCA CH    KG    GA  LT G +   L G D   +   +Q G    MPS+ 
Sbjct: 148 GELFRTNCAQCHNFTGKG----GA--LTHGKYAPSLEGVDPKHIYEAMQTGPQN-MPSF- 199

Query: 269 WAADGAKPRLSEAQIRAVASYVHSLGG 295
                    LSE   + + +Y+ ++ G
Sbjct: 200 -----PDTTLSEQNKKDIIAYLDAVNG 221
 Score = 43.0 bits (99), Expect = 0.004
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 13/98 (13%)

Query: 201 QPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGR 260
           + A  +    G++++A  CASCHG   +G         +DG  L G   A +   +  GR
Sbjct: 42  ESAQSLAIDEGKKLYAVGCASCHGTGGQGT--------SDGPSLVGVGAAAVDFQVGTGR 93

Query: 261 GGVMPSWSWAADGAKPRL--SEAQIRAVASYVHSLGGG 296
              MP+    A   K ++  S+A+I  +A+Y+ SLG G
Sbjct: 94  ---MPAQQPGAQVPKKKVIYSQAEIDQLAAYIASLGAG 128
 emb|CAB72530.1| (AL139074) putative cytochrome c [Campylobacter jejuni]
           Length = 347
           
 Score = 43.8 bits (101), Expect = 0.002
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 13/103 (12%)

Query: 196 LQISGQPADEVKATAGQQIFAENCASCHGEDAKGL----VEMGAPNLTDGIWLY--GGDV 249
           +    +PAD V+   G+++F ENC +CHGE   G+     E G+ +L   + +Y  GG +
Sbjct: 192 MNFPNRPADPVR---GKKLFEENCVACHGERGLGVKNDNYEQGSGHLYPSLLIYPDGGHM 248

Query: 250 ATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHS 292
           A +    ++ +   MP   + A    P LS+     +A+YV++
Sbjct: 249 AMIPFLARFLK-SAMP---FGASADNPILSDEDALDIAAYVNT 287
 sp|Q10386|QCRC_MYCTU UBIQUINOL-CYTOCHROME C REDUCTASE CYTOCHROME C SUBUNIT
           >gi|7477954|pir||C70784 probable cyoA - Mycobacterium
           tuberculosis (strain H37RV) >gi|1237047|emb|CAA94263.1|
           (Z70283) qcrC [Mycobacterium tuberculosis]
           Length = 280
           
 Score = 43.8 bits (101), Expect = 0.002
 Identities = 29/88 (32%), Positives = 43/88 (47%), Gaps = 12/88 (13%)

Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWA 270
           G+Q+F  +C SCHG + +G+ + G         L G   A +   +  GR   MP+    
Sbjct: 65  GKQLFDTSCVSCHGANLQGVPDHGPS-------LIGVGEAAVYFQVSTGR---MPAMRGE 114

Query: 271 ADGAK--PRLSEAQIRAVASYVHSLGGG 296
           A   +  P   EAQI A+ +YV + GGG
Sbjct: 115 AQAPRKDPIFDEAQIDAIGAYVQANGGG 142
 Score = 41.4 bits (95), Expect = 0.011
 Identities = 45/152 (29%), Positives = 54/152 (34%), Gaps = 25/152 (16%)

Query: 92  VATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIET 151
           V T    +A   E  +     G  +F T C  CHGA      G P    G  L G     
Sbjct: 44  VLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANL---QGVPD--HGPSLIGVGEAA 98

Query: 152 IYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEV 206
           +Y  V  G R P      +     A   D + + AQID +  YV    G P      D  
Sbjct: 99  VYFQVSTG-RMP-----AMRGEAQAPRKDPIFDEAQIDAIGAYVQANGGGPTVVRNPDGS 152

Query: 207 KAT---------AGQQIFAENCASCHGEDAKG 229
            AT          G  +F  NCASCH    KG
Sbjct: 153 IATQSLRGNDLGRGGDLFRLNCASCHNFTGKG 184
 sp|O69583|QCRC_MYCLE UBIQUINOL-CYTOCHROME C REDUCTASE CYTOCHROME C SUBUNIT
           >gi|3080504|emb|CAA18702.1| (AL022602) QcrC protein
           [Mycobacterium leprae]
           Length = 164
           
 Score = 43.4 bits (100), Expect = 0.003
 Identities = 28/88 (31%), Positives = 45/88 (50%), Gaps = 12/88 (13%)

Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWA 270
           G+Q+F  +C SCHG + +G+ + G         L G   A +   +  GR   MP+    
Sbjct: 74  GKQLFDTSCVSCHGANLQGVPDHGPS-------LIGVGEAAVYFQVSTGR---MPAMRGE 123

Query: 271 ADGAK--PRLSEAQIRAVASYVHSLGGG 296
           A  A+  P  +E+QI A+ +Y+ + GGG
Sbjct: 124 AQVARKDPIFNESQIDAIGAYIQANGGG 151
 pir||H54235 cb-type cytochrome-c oxidase 28K chain - Rhodobacter capsulatus
           (fragment) >gi|545951|gb|AAB30232.1| cb-type cytochrome
           c oxidase 28 kda subunit, cyt cb=fixP product homolog
           [Rhodobacter capsulatus, pMTo-404/MT-RBC1 cells, Peptide
           Partial, 22 aa, segment 2 of 3]
           Length = 22
           
 Score = 43.0 bits (99), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (99%)

Query: 86  AVEEKLVATDLTAIAADPELVT 107
           AVE+KLVATDLTAIAADPELVT
Sbjct: 1   AVEDKLVATDLTAIAADPELVT 22
 sp|P11448|CYC6_BRYMA CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (CYTOCHROME C553)
           >gi|65568|pir||CCBM6 cytochrome c6 - green alga
           (Bryopsis maxima) >gi|359742|prf||1313302A cytochrome c6
           [Bryopsis maxima]
           Length = 88
           
 Score = 41.8 bits (96), Expect = 0.008
 Identities = 27/82 (32%), Positives = 41/82 (49%), Gaps = 10/82 (12%)

Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGI-WLYGG-DVATLTSTIQYGRGGVMPSWS 268
           G  +F  NCA+CH   A  +  +   N  D   +L GG  +  +TS ++ G+ G MP+WS
Sbjct: 7   GADVFTGNCAACHAGGANSVEPLKTLNKEDVTKYLDGGLSIEAITSQVRNGK-GAMPAWS 65

Query: 269 WAADGAKPRLSEAQIRAVASYV 290
                   RL + +I  V +YV
Sbjct: 66  -------DRLDDEEIDGVVAYV 80
 Score = 32.8 bits (73), Expect = 4.1
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 17/89 (19%)

Query: 113 GAAVFRTWCAQCHGAGAGGNTGFPSLLDGD---WLHGG-AIETIYTNVKHGIRDPLDPDT 168
           GA VF   CA CH  GA       +L   D   +L GG +IE I + V++G         
Sbjct: 7   GADVFTGNCAACHAGGANSVEPLKTLNKEDVTKYLDGGLSIEAITSQVRNG--------- 57

Query: 169 LLVANMPAHLTDELLEPAQIDEVVQYVLQ 197
                MPA    + L+  +ID VV YV +
Sbjct: 58  --KGAMPA--WSDRLDDEEIDGVVAYVFK 82
 gb|AAB34245.1| cytochrome cd1-nitrite reductase [Paracoccus denitrificans,
           Peptide, 567 aa]
           Length = 567
           
 Score = 41.8 bits (96), Expect = 0.008
 Identities = 36/118 (30%), Positives = 51/118 (42%), Gaps = 17/118 (14%)

Query: 179 TDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQIFAENCASCHGEDAKGLVEM 233
           TD   EP+ +D + Q  +   G P       + +     +I+ E CA CHG   KG    
Sbjct: 21  TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKIYFERCAGCHGVLRKGATGK 79

Query: 234 G-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
              P+LT  +   G D   L S I YG    MP+W     G    LS  Q+  +A+Y+
Sbjct: 80  ALTPDLTRDL---GFDY--LQSFITYGSPAGMPNW-----GTSGELSAEQVDLMANYL 127
 sp|Q47945|CYCA_GLUSU ALCOHOL DEHYDROGENASE CYTOCHROME C SUBUNIT PRECURSOR (CYTOCHROME
           C-553) (C553) (G3-ADH SUBUNIT II)
           >gi|148734|gb|AAA24935.1| (M58760) cytochrome c-553
           [Gluconobacter suboxydans] >gi|2055287|dbj|BAA19754.1|
           (D86375) cytochrome-c subunit precursor of
           membrane-bound alcohol dehydrogenase [Gluconobacter
           suboxydans] >gi|382955|prf||1901325A cytochrome c553
           [Gluconobacter suboxydans]
           Length = 478
           
 Score = 41.4 bits (95), Expect = 0.011
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 139 LDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQI 198
           +D   + GG  + +  + +H   D L      + +MPA    E     Q D     +L  
Sbjct: 268 IDHSAVFGGMADVVAYSTQHWSDDDLRATAKYLKSMPA--VPEGKNLGQDDGQTTALLNK 325

Query: 199 SGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQY 258
            GQ        AG +++  NCA CH  D  G+  M  P L     +   D  +L + + +
Sbjct: 326 GGQ------GNAGAEVYLHNCAICHMNDGTGVNRM-FPPLAGNPVVITDDPTSLANVVAF 378

Query: 259 GRGGVMPSWSWAAD-----GAKPRLSEAQIRAVASYV 290
             GG++P  + A       G K  LS+ ++  V +++
Sbjct: 379 --GGILPPTNSAPSAVAMPGFKNHLSDQEMADVVNFM 413
 sp|P24474|NIRS_PSEAE NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
           >gi|279447|pir||OSPSA Pseudomonas cytochrome oxidase (EC
           1.9.3.2) precursor - Pseudomonas aeruginosa
           >gi|45358|emb|CAA34471.1| (X16452) nitrite reductase
           (NAD(P)H) [Pseudomonas aeruginosa]
           >gi|226476|prf||1514116A nitrite reductase [Pseudomonas
           aeruginosa]
           Length = 568
           
 Score = 41.4 bits (95), Expect = 0.011
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 176 AHLTDELLEPAQIDEVVQ-----YVLQISGQP-ADEVKATAGQQIFAENCASCHGEDAKG 229
           AH  D++    Q           +V++ +G P   E +    +QI+ + CA CHG   KG
Sbjct: 23  AHAKDDMKAAEQYQGAASAVDPAHVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKG 82

Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
               G P LT  I    G    L + I YG    MP+W     G+   LS+ QI  +A Y
Sbjct: 83  AT--GKP-LTPDITQQRGQ-QYLEALITYGTPLGMPNW-----GSSGELSKEQITLMAKY 133

Query: 290 V 290
           +
Sbjct: 134 I 134
 pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
           >gi|2781089|pdb|1NIR|B Chain B, Oxydized Nitrite
           Reductase From Pseudomonas Aeruginosa
           >gi|4929916|pdb|1BL9|A Chain A, Conformational Changes
           Occurring Upon Reduction In Nitrite Reductase From
           Pseudomonas Aeruginosa >gi|4929917|pdb|1BL9|B Chain B,
           Conformational Changes Occurring Upon Reduction In
           Nitrite Reductase From Pseudomonas Aeruginosa
           >gi|4930068|pdb|1NNO|A Chain A, Conformational Changes
           Occurring Upon No Binding In Nitrite Reductase From
           Pseudomonas Aeruginosa >gi|4930069|pdb|1NNO|B Chain B,
           Conformational Changes Occurring Upon No Binding In
           Nitrite Reductase From Pseudomonas Aeruginosa
           >gi|5542315|pdb|1N15|A Chain A, Following The C Heme
           Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa >gi|5542316|pdb|1N15|B Chain B, Following The
           C Heme Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa >gi|5542317|pdb|1N50|A Chain A, Following The
           C Heme Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa >gi|5542318|pdb|1N50|B Chain B, Following The
           C Heme Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa >gi|5542319|pdb|1N90|A Chain A, Following The
           C Heme Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa >gi|5542320|pdb|1N90|B Chain B, Following The
           C Heme Reduction In Nitrite Reductase From Pseudomonas
           Aeruginosa
           Length = 543
           
 Score = 41.0 bits (94), Expect = 0.014
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 194 YVLQISGQP-ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATL 252
           +V++ +G P   E +    +QI+ + CA CHG   KG    G P LT  I    G    L
Sbjct: 21  HVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKGAT--GKP-LTPDITQQRGQ-QYL 76

Query: 253 TSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
            + I YG    MP+W     G+   LS+ QI  +A Y+
Sbjct: 77  EALITYGTPLGMPNW-----GSSGELSKEQITLMAKYI 109
 prf||2009317B alcohol dehydrogenase [Acetobacter aceti]
           Length = 472
           
 Score = 40.6 bits (93), Expect = 0.018
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 203 ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGG 262
           ++     AG + + E CA CH  D  G+  M  P   + + +     +     +    GG
Sbjct: 315 SNNFSGNAGAKTYVEQCAICHRNDGGGVARMFPPLAGNPVVVSDNPTSVAHIVVD---GG 371

Query: 263 VMPSWSWAADGA-----KPRLSEAQIRAVASYVHSLGGGQ 297
           V+P  +WA         K  LS+ QI  V +++ S  G +
Sbjct: 372 VLPPTNWAPSAVAMPDYKNILSDQQIADVVNFIRSAWGNR 411
 gb|AAC21674.1| (AF002222) PvcD [Pseudomonas aeruginosa]
           Length = 215
           
 Score = 40.6 bits (93), Expect = 0.018
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 41/201 (20%)

Query: 113 GAAVFRTWCAQCHGAGAGG----NTGFPSL--LDGDWLHGGAIETIYTNVKHGIRDPLDP 166
           G A+ +  C++CH     G    N  +P L  LD ++L+    + IY           D 
Sbjct: 36  GKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREYLY----KQIY-----------DL 80

Query: 167 DTLLVANMPAHLTDELLEPAQIDEVVQYVL---QISGQP--ADEVKATAGQQIFAEN--- 218
            T    N   +   E L  A +  V  +       +G+   AD  +   G+Q+F      
Sbjct: 81  KTQRRRNPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPRQRERGRQLFENGLAQ 140

Query: 219 -----CASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
                C +CHG  A+GL  + AP L  G W     +AT     + G+ G   +    A G
Sbjct: 141 RGVPPCVTCHGPAAQGLAALKAPRLA-GQW--AEYLATQLHGFRDGKRGNSATMRAVAGG 197

Query: 274 AKPRLSEAQIRAVASYVHSLG 294
               L ++ I+A+A Y+ SLG
Sbjct: 198 ----LEDSHIQALAGYLGSLG 214
 sp|P08197|CYC6_CHLRE CYTOCHROME C6 PRECURSOR (CYTOCHROME C552) >gi|2144284|pir||CCKM6R
           cytochrome c6 precursor - Chlamydomonas reinhardtii
           >gi|167415|gb|AAB00729.1| (M67448) cytochrome c-6
           [Chlamydomonas reinhardtii]
           Length = 148
           
 Score = 40.6 bits (93), Expect = 0.018
 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 176 AHLTDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCH--GEDA----KG 229
           A LT  L   A I      +L      A       G Q+F  NCA+CH  G ++    K 
Sbjct: 35  APLTSALAVTASI------LLTTGAASASAADLALGAQVFNGNCAACHMGGRNSVMPEKT 88

Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
           L +       DG    G  V ++   ++ G+ G MP+W+        RLSE +I+AVA Y
Sbjct: 89  LDKAALEQYLDG----GFKVESIIYQVENGK-GAMPAWA-------DRLSEEEIQAVAEY 136

Query: 290 V 290
           V
Sbjct: 137 V 137
 pir||B49340 membrane-bound alcohol dehydrogenase (EC 1.1.-.-) cytochrome c
           precursor - Acetobacter pasteurianus
           >gi|452587|dbj|BAA02993.1| (D13893) cytochrome c subunit
           of alcohol dehydrogenase [Acetobacter pasteurianus]
           Length = 472
           
 Score = 40.6 bits (93), Expect = 0.018
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 203 ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGG 262
           ++     AG + + E CA CH  D  G+  M  P   + + +     +     +    GG
Sbjct: 315 SNNFSGNAGAKTYVEQCAICHRNDGGGVARMFPPLAGNPVVVSDNPTSVAHIVVD---GG 371

Query: 263 VMPSWSWAADGA-----KPRLSEAQIRAVASYVHSLGGGQ 297
           V+P  +WA         K  LS+ QI  V +++ S  G +
Sbjct: 372 VLPPTNWAPSAVAMPDYKNILSDQQIADVVNFIRSAWGNR 411
 sp|Q51700|NIRS_PARDE NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
           >gi|452453|gb|AAA93118.1| (U05002) cytochrome cd1
           nitrite reductase [Paracoccus denitrificans]
           >gi|1093923|prf||2105165A cytochrome cd1 nitrite
           reductase [Paracoccus denitrificans]
           Length = 596
           
 Score = 40.2 bits (92), Expect = 0.024
 Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 17/118 (14%)

Query: 179 TDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQIFAENCASCHGEDAKGLVEM 233
           TD   EP+ +D + Q  +   G P       + +     +I+ E CA CHG   KG    
Sbjct: 50  TDNRYEPS-LDNLAQQDVAALGAPEGIPALSDAQYNEANKIYFERCAGCHGVLRKGATGK 108

Query: 234 G-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
              P+LT  +   G D   L S I YG    MP+W     G    L+  Q+  +A+Y+
Sbjct: 109 ALTPDLTRDL---GFDY--LQSFITYGSPAGMPNW-----GTSGELTAEQVDLMANYL 156
 sp|P72181|NIRS_PARDT NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
           >gi|1654415|gb|AAB17878.1| (U75413) cytochrome cd1
           nitrite reductase [Paracoccus denitrificans]
           Length = 596
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 160 IRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQI 214
           +  P DP   L  +     TD   EP+ +D + Q  +   G P       + +     +I
Sbjct: 33  VAPPKDPAAALEDHKTR--TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKI 89

Query: 215 FAENCASCHGEDAKGLVEMG-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
           + E CA CHG   KG       P+LT  +   G D   L S I Y     MP+W     G
Sbjct: 90  YFERCAGCHGVLRKGATGKALTPDLTRDL---GFDY--LQSFITYASPAGMPNW-----G 139

Query: 274 AKPRLSEAQIRAVASYV 290
               LS  Q+  +A+Y+
Sbjct: 140 TSGELSAEQVDLMANYL 156
 pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
           >gi|2624770|pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite
           Reductase, Reduced Form >gi|2914159|pdb|1AOM|A Chain A,
           Substrate And Product Bound To Cytochrome Cd1 Nitrite
           Reductase >gi|2914160|pdb|1AOM|B Chain B, Substrate And
           Product Bound To Cytochrome Cd1 Nitrite Reductase
           >gi|2914161|pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite
           Reductase With Substrate And Product Bound
           >gi|2914162|pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite
           Reductase With Substrate And Product Bound
           >gi|5822312|pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite
           Reductase, Oxidised Form >gi|5822313|pdb|1QKS|B Chain B,
           Cytochrome Cd1 Nitrite Reductase, Oxidised Form
           Length = 567
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 160 IRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQI 214
           +  P DP   L  +     TD   EP+ +D + Q  +   G P       + +     +I
Sbjct: 4   VAPPKDPAAALEDHKTR--TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKI 60

Query: 215 FAENCASCHGEDAKGLVEMG-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
           + E CA CHG   KG       P+LT  +   G D   L S I Y     MP+W     G
Sbjct: 61  YFERCAGCHGVLRKGATGKALTPDLTRDL---GFDY--LQSFITYASPAGMPNW-----G 110

Query: 274 AKPRLSEAQIRAVASYV 290
               LS  Q+  +A+Y+
Sbjct: 111 TSGELSAEQVDLMANYL 127
 sp|P29899|CYCL_PARDE CYTOCHROME C-L PRECURSOR (CYTOCHROME C551I) (C552)
           >gi|94688|pir||B41377 cytochrome c-L precursor -
           Paracoccus denitrificans >gi|150591|gb|AAA25583.1|
           (M57684) cytochrome c-551i [Paracoccus denitrificans]
           Length = 177
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATA--GQQIFAENCASCHGEDAKGLVEMGAPN 237
           D+ +E  +  E V++ L+      +E        ++++A  C+ CHG  A+G +    P 
Sbjct: 38  DDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKI---GPG 94

Query: 238 LTDGIWLYGGDVAT--LTSTIQYGRGGVM-PSW 267
           L D  W Y G+     L ST+  G  G M P W
Sbjct: 95  LNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW 127
 pdb|1CYJ|    Cytochrome C6 >gi|1310884|pdb|1CYI|  Cytochrome C6
           Length = 90
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 30/86 (34%), Positives = 44/86 (50%), Gaps = 18/86 (20%)

Query: 211 GQQIFAENCASCH--GEDA----KGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVM 264
           G Q+F  NCA+CH  G ++    K L +       DG    G  V ++   ++ G+ G M
Sbjct: 6   GAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDG----GFKVESIIYQVENGK-GAM 60

Query: 265 PSWSWAADGAKPRLSEAQIRAVASYV 290
           P+W+        RLSE +I+AVA YV
Sbjct: 61  PAWA-------DRLSEEEIQAVAEYV 79
 sp|Q56247|C551_BACP3 CYTOCHROME C-551 PRECURSOR (C551) >gi|1072836|pir||S43726
           cytochrome c551 precursor - thermophilic bacterium PS-3
           >gi|402789|emb|CAA44835.1| (X63125) cytochrome c-551
           [thermophilic bacterium PS3]
           Length = 111
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 24/56 (42%), Positives = 30/56 (52%), Gaps = 5/56 (8%)

Query: 208 ATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGV 263
           A A +QIF +NCASCHG+D  G V    PNL      Y  D   + + I  GRG +
Sbjct: 40  AAAAEQIFKQNCASCHGQDLSGGV---GPNLQKVGSKYSKD--EIKNIIANGRGAM 90
 pdb|2MTA|C Chain C, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
           Amicyanin And Cytochrome C551i
           Length = 147
           
 Score = 39.9 bits (91), Expect = 0.032
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATA--GQQIFAENCASCHGEDAKGLVEMGAPN 237
           D+ +E  +  E V++ L+      +E        ++++A  C+ CHG  A+G +    P 
Sbjct: 16  DDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKI---GPG 72

Query: 238 LTDGIWLYGGDVAT--LTSTIQYGRGGVM-PSW 267
           L D  W Y G+     L ST+  G  G M P W
Sbjct: 73  LNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW 105
 pir||C75521 cytochrome-related protein - Deinococcus radiodurans (strain R1)
           >gi|6458109|gb|AAF10006.1|AE001902_6 (AE001902)
           cytochrome-related protein [Deinococcus radiodurans]
           Length = 251
           
 Score = 39.5 bits (90), Expect = 0.041
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 20/93 (21%)

Query: 208 ATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGI-WLYGGDVATLTSTIQYGR------ 260
           A AG+++FA NCA+CHG + +G V    P+L   + W    D    T+ ++ G+      
Sbjct: 171 ANAGKEVFAGNCAACHGAEGQGAV---GPSLQPTVEW----DDTQFTAALREGKAPDREL 223

Query: 261 GGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
             +MP ++ A      +LS  Q+  V +Y+ +L
Sbjct: 224 NTIMPRFTEA------QLSAQQVADVHAYIKTL 250
 Score = 35.2 bits (79), Expect = 0.81
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 111 NAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLL 170
           NAG  VF   CA CHGA   G  G PSL          +E   T     +R+   PD  L
Sbjct: 172 NAGKEVFAGNCAACHGAEGQGAVG-PSLQP-------TVEWDDTQFTAALREGKAPDREL 223

Query: 171 VANMPAHLTDELLEPAQIDEVVQYV 195
              MP   T+  L   Q+ +V  Y+
Sbjct: 224 NTIMP-RFTEAQLSAQQVADVHAYI 247
 sp|O30881|CYC6_SYNP2 CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOCHROME F) (CYTOCHROME C553)
           >gi|2522461|gb|AAB81077.1| (AF020306) cytochrome c6
           precursor [Synechococcus PCC7002]
           Length = 117
           
 Score = 39.1 bits (89), Expect = 0.054
 Identities = 30/97 (30%), Positives = 43/97 (43%), Gaps = 13/97 (13%)

Query: 200 GQPADEVKATAGQQIFAENCASCHGEDAKGLV---EMGAPNLTDGIWLYGGDVATLTSTI 256
           G PA    A AG Q+FA NCA+CH      ++    + A  L   +  Y     +L   +
Sbjct: 19  GTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAV 78

Query: 257 QY---GRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
            Y      G MP++         RLS+A I  VA+Y+
Sbjct: 79  AYQVTNGQGAMPAFG-------GRLSDADIANVAAYI 108
 gb|AAA33081.1| (J02774) pre-apocytochrome c552 [Chlamydomonas reinhardtii]
           Length = 148
           
 Score = 39.1 bits (89), Expect = 0.054
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 24/121 (19%)

Query: 176 AHLTDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCH--GEDA----KG 229
           A LT  L   A I      +L      A       G Q+F  NCA+CH  G ++    K 
Sbjct: 35  APLTSALAVTASI------LLTTGAASASAADLALGAQVFNGNCAACHMGGRNSVMPEKT 88

Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
           L +       DG    G  V +    ++ G+ G MP+W+        RLSE +I+AVA Y
Sbjct: 89  LDKAALEQYLDG----GFKVESSIYQVENGK-GAMPAWA-------DRLSEEEIQAVAEY 136

Query: 290 V 290
           V
Sbjct: 137 V 137
 sp|Q09099|CYC6_MONBR CYTOCHROME C6 (CYTOCHROME C552) >gi|479935|pir||S35677 cytochrome
           c6 - Monoraphidium braunii >gi|1633540|pdb|1CTJ|
           Crystal Structure Of Cytochrome C6 >gi|1827816|pdb|1CED|
            The Structure Of Cytochrome C6 From Monoraphidium
           Braunii, Nmr, Minimized Average Structure
           Length = 89
           
 Score = 39.1 bits (89), Expect = 0.054
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 205 EVKATAGQQIFAENCASCHGEDAKGLV------EMGAPNLTDGIWLYGGDVATLTSTIQY 258
           E     G+ +F  NCA+CH      ++      +       DG    G ++  +   I+ 
Sbjct: 1   EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDG----GFNIEAIVYQIEN 56

Query: 259 GRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
           G+ G MP+W    DG   RL E +I  VA+YV+    G
Sbjct: 57  GK-GAMPAW----DG---RLDEDEIAGVAAYVYDQAAG 86
 pir||S77923 cytochrome c6 - green alga (Scenedesmus obliquus)
           Length = 89
           
 Score = 38.7 bits (88), Expect = 0.071
 Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 10/88 (11%)

Query: 211 GQQIFAENCASCH-GEDAKGLVEMGAPNLTDGIWLYGG-DVATLTSTIQYGRGGVMPSWS 268
           G+Q F  NCA+CH G +   + +          +L GG ++  +T  ++ G+ G MP+WS
Sbjct: 7   GKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENGK-GAMPAWS 65

Query: 269 WAADGAKPRLSEAQIRAVASYVHSLGGG 296
              D       + +I AVA+YV+    G
Sbjct: 66  GTLD-------DDEIAAVAAYVYDQASG 86
 pdb|1A2S|    The Solution Nmr Structure Of Oxidized Cytochrome C6 From The
           Green Alga Monoraphidium Braunii, Minimized Average
           Structure
           Length = 89
           
 Score = 38.3 bits (87), Expect = 0.093
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 18/92 (19%)

Query: 211 GQQIFAENCASCHGEDAKGLV------EMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVM 264
           G+ +F  NCA+CH      ++      +       DG    G ++  +   I+ G+ G M
Sbjct: 7   GKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDG----GFNIEAIVYQIENGK-GAM 61

Query: 265 PSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
           P+W    DG   RL E +I  VA+YV+    G
Sbjct: 62  PAW----DG---RLDEDEIAGVAAYVYDQAAG 86
 gb|AAD00004.1| (U39811) CytM [Synechococcus PCC7942]
           Length = 145
           
 Score = 38.3 bits (87), Expect = 0.093
 Identities = 23/59 (38%), Positives = 30/59 (49%), Gaps = 8/59 (13%)

Query: 182 LLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
           L+ PA  D  V  VL + G       A  GQ IF  NCA CHG + +GLV     N+++
Sbjct: 56  LIRPA--DPYVSTVLNLPGN------AERGQAIFQINCAGCHGPEGRGLVGPDLANVSN 106
  Database: nr
    Posted date:  Apr 7, 2000 10:55 PM
  Number of letters in database: 154,329,450
  Number of sequences in database:  492,152
  
Lambda     K      H
   0.316    0.133    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99502358
Number of Sequences: 492152
Number of extensions: 4400743
Number of successful extensions: 12283
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 12036
Number of HSP's gapped (non-prelim): 178
length of query: 297
length of database: 154,329,450
effective HSP length: 52
effective length of query: 245
effective length of database: 128,737,546
effective search space: 31540698770
effective search space used: 31540698770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 70 (31.7 bits)