Score E
Sequences producing significant alignments: (bits) Value
pir||S49348 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ... 623 e-178
gb|AAC46111.1| (AF016223) di-heme cytochrome cp [Rhodobacte... 585 e-166
gb|AAB02559.1| (U58092) cbb3-type cytochrome c oxidase CcoP... 366 e-100
pir||S77598 cytochrome-c oxidase (EC 1.9.3.1) type cbb3 cha... 348 3e-95
emb|CAA52432.1| (X74410) fixP [Azorhizobium caulinodans] 279 2e-74
pir||D55582 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ... 275 3e-73
pir||S39991 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ... 265 5e-70
emb|CAB02452.1| (Z80340) FixPc [Rhizobium leguminosarum] 254 8e-67
pir||D47468 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - ... 252 2e-66
gb|AAC72074.1| (AF054871) cytcbb3 cytochrome c oxidase CytP... 245 4e-64
gb|AAC15890.1| (U76906) di-heme cytochrome c; FixP [Rhizobi... 242 4e-63
dbj|BAA75505.1| (AB024290) cb-type cytochrome c oxidase Cco... 233 2e-60
gb|AAF42068.1| (AE002522) cytochrome c oxidase, subunit III... 178 7e-44
emb|CAB85197.1| (AL162757) putative cytochrome c [Neisseria... 178 7e-44
emb|CAA04804.1| (AJ001522) FixP protein [Rhizobium legumino... 174 8e-43
gb|AAC44983.1| (AF202779) CcoP [Rhodobacter sphaeroides] 161 1e-38
dbj|BAA89395.1| (AB025342) ORF21 [Moritella marina] 129 3e-29
gb|AAB58267.1| (U90521) cbb3-type cytochrome oxidase compon... 103 2e-21
emb|CAB73909.1| (AL139078) cb-type cytochrome C oxidase sub... 76 3e-13
dbj|BAA33529.1| (AB018105) cb-type cytochrome c oxidase sub... 68 1e-10
pir||B71970 cytochrome oxidase (cbb3-type) - Helicobacter p... 66 6e-10
pir||C64538 cytochrome-c oxidase (EC 1.9.3.1) chain fixP - ... 61 1e-08
pir||T35532 qcrC protein - Streptomyces coelicolor >gi|4539... 46 4e-04
emb|CAB72530.1| (AL139074) putative cytochrome c [Campyloba... 44 0.002
sp|Q10386|QCRC_MYCTU UBIQUINOL-CYTOCHROME C REDUCTASE CYTOC... 44 0.002
sp|O69583|QCRC_MYCLE UBIQUINOL-CYTOCHROME C REDUCTASE CYTOC... 43 0.003
pir||H54235 cb-type cytochrome-c oxidase 28K chain - Rhodob... 43 0.004
sp|P11448|CYC6_BRYMA CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 42 0.008
gb|AAB34245.1| cytochrome cd1-nitrite reductase [Paracoccus... 42 0.008
sp|Q47945|CYCA_GLUSU ALCOHOL DEHYDROGENASE CYTOCHROME C SUB... 41 0.011
sp|P24474|NIRS_PSEAE NITRITE REDUCTASE PRECURSOR (CYTOCHROM... 41 0.011
pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudom... 41 0.014
prf||2009317B alcohol dehydrogenase [Acetobacter aceti] 41 0.018
gb|AAC21674.1| (AF002222) PvcD [Pseudomonas aeruginosa] 41 0.018
sp|P08197|CYC6_CHLRE CYTOCHROME C6 PRECURSOR (CYTOCHROME C5... 41 0.018
pir||B49340 membrane-bound alcohol dehydrogenase (EC 1.1.-.... 41 0.018
sp|Q51700|NIRS_PARDE NITRITE REDUCTASE PRECURSOR (CYTOCHROM... 40 0.024
sp|P72181|NIRS_PARDT NITRITE REDUCTASE PRECURSOR (CYTOCHROM... 40 0.032
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduc... 40 0.032
sp|P29899|CYCL_PARDE CYTOCHROME C-L PRECURSOR (CYTOCHROME C... 40 0.032
pdb|1CYJ| Cytochrome C6 >gi|1310884|pdb|1CYI| Cytochrom... 40 0.032
sp|Q56247|C551_BACP3 CYTOCHROME C-551 PRECURSOR (C551) >gi|... 40 0.032
pdb|2MTA|C Chain C, Methylamine Dehydrogenase (E.C.1.4.99.3... 40 0.032
pir||C75521 cytochrome-related protein - Deinococcus radiod... 39 0.041
sp|O30881|CYC6_SYNP2 CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC... 39 0.054
gb|AAA33081.1| (J02774) pre-apocytochrome c552 [Chlamydomon... 39 0.054
sp|Q09099|CYC6_MONBR CYTOCHROME C6 (CYTOCHROME C552) >gi|47... 39 0.054
pir||S77923 cytochrome c6 - green alga (Scenedesmus obliquus) 39 0.071
pdb|1A2S| The Solution Nmr Structure Of Oxidized Cytochr... 38 0.093
gb|AAD00004.1| (U39811) CytM [Synechococcus PCC7942] 38 0.093
emb|CAB84197.1| (AL162754) putative cytochrome C [Neisseria... 38 0.093
gb|AAF41130.1| (AE002426) cytochrome, putative [Neisseria m... 38 0.093
pir||A23711 cytochrome-c oxidase (EC 1.9.3.1) chain II/c pr... 38 0.12
sp|P14774|CYCL_METEX CYTOCHROME C-L PRECURSOR >gi|78067|pir... 38 0.12
pir||T31449 diheme cytochrome-c oxidase (EC 1.9.3.-) petA -... 38 0.16
dbj|BAA92379.1| (AB039821) sorbitol dehydrogenase cytochrom... 38 0.16
pir||C69597 cytochrome c551 cccB - Bacillus subtilis >gi|26... 37 0.21
emb|CAA62740.1| (X91394) cytochrome cd1 nitrite reductase [... 37 0.21
prf||2009331A nitrite reductase [Paracoccus denitrificans] 37 0.21
gb|AAF61450.1|AF139113_3 (AF139113) c-type cytochrome SoxD ... 37 0.21
dbj|BAA23274.1| (AB004097) cytochrome CL [Hyphomicrobium me... 37 0.21
gb|AAD00299.1| (U79185) CytM [Prochlorothrix hollandica] 37 0.27
gb|AAF21262.1|AF068066_3 (AF068066) cytochrome c subunit II... 36 0.36
sp|P00117|CYC6_PLEBO CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 36 0.36
sp|P00107|CYC6_PAVLU CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 36 0.47
sp|P00112|CYC6_MICAE CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 36 0.47
sp|P00123|C555_CHLLT CYTOCHROME C-555 (C555) >gi|65574|pir|... 36 0.62
sp|Q03318|CYCA_ACEPO ALCOHOL DEHYDROGENASE CYTOCHROME C SUB... 36 0.62
sp|P46445|CYC6_SYNY3 CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC... 35 0.81
emb|CAB51077.1| (AJ130725) cytochrome c6 precursor [Euglena... 35 0.81
emb|CAA55825.1| (X79242) cytochrome [Paracoccus denitrificans] 35 0.81
sp|P00119|CYC6_EUGGR CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 35 0.81
sp|P80091|C550_BACHA CYTOCHROME C-550 (C550) >gi|285256|pir... 35 1.1
emb|CAB83630.1| (AL162752) adhesin [Neisseria meningitidis] 34 1.4
gb|AAD31038.1|AF142582_2 (AF142582) adhesin MafA [Neisseria... 34 1.4
pir||G75531 cytochrome c family protein - Deinococcus radio... 34 1.8
sp|Q51702|NIRC_PARDE C-TYPE CYTOCHROME C55X PRECURSOR >gi|4... 34 1.8
sp|Q41346|CYC_STELP CYTOCHROME C >gi|440586|emb|CAA79708.1|... 33 3.1
dbj|BAA12828.1| (D85547) cytochrome c oxidase subunit II [B... 33 3.1
sp|P22343|CYC6_EUGVI CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 33 3.1
sp|Q06529|CYSD_CHRVI CYTOCHROME SUBUNIT OF SULFIDE DEHYDROG... 33 3.1
pir||CCIA6 cytochrome c6 - Microcystis aeruginosa 33 3.1
gb|AAD10281.1| (U39874) CytM [Anabaena variabilis] 33 4.1
gb|AAF12937.1|AF022186_59 (AF022186) unknown; cytochrome c5... 33 4.1
sp|P25935|CYC6_SYNP7 CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC... 33 4.1
pir||F75267 probable cytochrome C4 - Deinococcus radioduran... 33 4.1
pdb|1FCD|C Chain C, Flavocytochrome C Sulfide Dehydrogenase... 32 5.3
sp|P28596|CYC6_ANASP CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOC... 32 5.3
sp|P24469|C550_BACSU CYTOCHROME C-550 >gi|98266|pir||A37129... 32 5.3
gb|AAC43501.1| (U35445) CcoP [Rhodobacter sphaeroides] 32 5.3
pir||CCPS4A cytochrome c4 - Pseudomonas aeruginosa 32 5.3
sp|P12831|CYC_SARPE CYTOCHROME C >gi|85278|pir||B25506 cyto... 32 7.0
pir||E75551 probable acyl-peptide hydrolase - Deinococcus r... 32 7.0
sp|P07497|CYC6_ANANI CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (... 32 7.0
prf||1011182A cytochrome c [Musca sp.] 32 7.0
sp|P38587|C551_ECTHL CYTOCHROME C-551 (C551) >gi|541278|pir... 32 7.0
dbj|BAA78856.1| (AP000342) 98% identical to gp:ECU51859_5[T... 32 7.0
sp|P00036|CYC_LUCCU CYTOCHROME C >gi|65480|pir||CCHFGB cyto... 32 7.0
gb|AAB07771.1| (U51859) TraP [Escherichia coli] 32 7.0
sp|P00035|CYC_HAEIR CYTOCHROME C >gi|65479|pir||CCFHHF cyto... 32 7.0
pir||S49348 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Rhodobacter
capsulatus >gi|2126458|pir||S65861 ccoP protein -
Rhodobacter capsulatus >gi|556816|emb|CAA56436.1|
(X80134) CcoP [Rhodobacter capsulatus]
Length = 297
Score = 623 bits (1589), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60
MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA
Sbjct: 1 MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60
Query: 61 TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120
TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW
Sbjct: 61 TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120
Query: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180
CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD
Sbjct: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180
Query: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD
Sbjct: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
Query: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ
Sbjct: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
gb|AAC46111.1| (AF016223) di-heme cytochrome cp [Rhodobacter capsulatus]
Length = 297
Score = 585 bits (1492), Expect = e-166
Identities = 272/297 (91%), Positives = 286/297 (95%)
Query: 1 MSKKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKA 60
MSKKPTTKKEVQTTGH WDGIEELNTPLPRWWLWTFYATI+WGVAYSIAMPAWPIF A
Sbjct: 1 MSKKPTTKKEVQTTGHSWDGIEELNTPLPRWWLWTFYATIVWGVAYSIAMPAWPIFPSGA 60
Query: 61 TPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTW 120
TPG+L SSTRADVEKDIAKFAEMNKAVE+KLVATD+TAIAADPELVTYTRNAGAAVFRTW
Sbjct: 61 TPGILRSSTRADVEKDIAKFAEMNKAVEDKLVATDVTAIAADPELVTYTRNAGAAVFRTW 120
Query: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTD 180
CAQCHGAGAGGNTGFPSLLDGDWLHGG+IETIYTN+KHGIRDPLDPDTL VANMPAHLTD
Sbjct: 121 CAQCHGAGAGGNTGFPSLLDGDWLHGGSIETIYTNIKHGIRDPLDPDTLPVANMPAHLTD 180
Query: 181 ELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
ELLEPAQID+VVQYVL+ISGQPADE +ATAGQQ+FA+NC SCHGEDAKG+VEMGAPNLTD
Sbjct: 181 ELLEPAQIDDVVQYVLKISGQPADEARATAGQQVFADNCVSCHGEDAKGMVEMGAPNLTD 240
Query: 241 GIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
GIWLYGGD T+T+TIQ GRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ
Sbjct: 241 GIWLYGGDAKTITTTIQLGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
gb|AAB02559.1| (U58092) cbb3-type cytochrome c oxidase CcoP subunit [Rhodobacter
sphaeroides]
Length = 290
Score = 366 bits (929), Expect = e-100
Identities = 178/299 (59%), Positives = 214/299 (71%), Gaps = 11/299 (3%)
Query: 1 MSKKPTTKK--EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSD 58
MS KPT +K E TTGH WDGIEE + P+PRWWLWTFY TI+W + YSI PAWP+ +
Sbjct: 1 MSVKPTKQKPGEPPTTGHSWDGIEEFDNPMPRWWLWTFYVTIVWAIGYSILYPAWPLING 60
Query: 59 KATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFR 118
AT GL+G STRADV++DI FAE N + ++LV TDLTAIAADP L+ Y NAGAAVFR
Sbjct: 61 -ATNGLIGHSTRADVQRDIEAFAEANATIRQQLVNTDLTAIAADPNLLQYATNAGAAVFR 119
Query: 119 TWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHL 178
T C QCHG+GA GN G+P+LLD DWL GG IE+I+T V HGIR+ D D + MP
Sbjct: 120 TNCVQCHGSGAAGNVGYPNLLDDDWLWGGDIESIHTTVTHGIRNTTD-DEARYSEMPRFG 178
Query: 179 TDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNL 238
D LL+ QI +VV+YVLQISGQ D + G IFA+NCA+CHGED G ++GAPNL
Sbjct: 179 ADGLLDSTQISQVVEYVLQISGQDHDAALSAEGATIFADNCAACHGEDGTGSRDVGAPNL 238
Query: 239 TDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
TD IWLYGGD AT+T T+ Y R GVMP+W+ RL+EA IR+VA YVH LGGG+
Sbjct: 239 TDAIWLYGGDRATVTETVTYARFGVMPNWN-------ARLTEADIRSVAVYVHGLGGGE 290
pir||S77598 cytochrome-c oxidase (EC 1.9.3.1) type cbb3 chain fixP - Paracoccus
denitrificans >gi|1002881|gb|AAC44519.1| (U34353) CcoP
[Paracoccus denitrificans]
Length = 348
Score = 348 bits (884), Expect = 3e-95
Identities = 170/288 (59%), Positives = 204/288 (70%), Gaps = 9/288 (3%)
Query: 10 EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
EV +TGH WDGIEE + PLPRWWLWTFYATI+WGV Y IA PA P+ + AT GLLG +
Sbjct: 70 EVPSTGHSWDGIEEYDNPLPRWWLWTFYATIVWGVLYLIAYPAIPLVNG-ATQGLLGQNY 128
Query: 70 RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
R+DV +I +F E N ++ KLV T L IAADPEL YT NAGAA+FRTWCAQCHG+GA
Sbjct: 129 RSDVAAEIQRFNEANAPIQAKLVETPLEEIAADPELANYTANAGAAIFRTWCAQCHGSGA 188
Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
GG TG+PSLLD DWL GG +E I+T V HGIRDP D DT + MP D LLE AQI
Sbjct: 189 GGATGYPSLLDNDWLWGGTLEEIHTTVMHGIRDPKDADT-RYSEMPRFGIDGLLENAQIS 247
Query: 190 EVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDV 249
+VV +VL++ G P D A G ++FA+NC+SCH ED G GAP+LTD +WLYG D
Sbjct: 248 QVVNHVLELGGLPHDAALAAEGVEVFADNCSSCHAEDGTGDRAQGAPDLTDAVWLYGSDP 307
Query: 250 ATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
AT+T ++ G GVMP+W+ RLSEA I AVA+YVHSLGGG+
Sbjct: 308 ATITRIVRDGPFGVMPAWT-------GRLSEADIVAVAAYVHSLGGGE 348
emb|CAA52432.1| (X74410) fixP [Azorhizobium caulinodans]
Length = 293
Score = 279 bits (706), Expect = 2e-74
Identities = 144/286 (50%), Positives = 175/286 (60%), Gaps = 13/286 (4%)
Query: 13 TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
TTGH+WDGI+ELN PLPRWWLWTFYATIIW Y +A PAWP+ S+ T G+LG ++R+
Sbjct: 20 TTGHEWDGIQELNNPLPRWWLWTFYATIIWAFGYWVAYPAWPLVSNY-TSGVLGWNSRSA 78
Query: 73 VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
V + I+ ++ A KL L I +PEL++ R G F CA CHGAG GG
Sbjct: 79 VVEQISDLQKLRAASSAKLANVPLEDIEKNPELLSLARAEGKVAFADNCAPCHGAGGGGA 138
Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
GFP+L D DWL GG + I + HGIR D NM A +L A I V
Sbjct: 139 KGFPNLNDDDWLWGGTLAQIQQTITHGIRSGDDEGHQ--GNMLAF--GSILSKADISNVA 194
Query: 193 QYVLQISGQ-PADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
YV +SG P D A G +IFA NCA+CHGE+ KG E+G+ NLTDGIWLYGGD AT
Sbjct: 195 DYVRSLSGAAPGDTPAAKKGAEIFAANCATCHGENGKGNQELGSKNLTDGIWLYGGDKAT 254
Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
+ TI GRGGVMP+W PRLS I+A+ YVH+LGGGQ
Sbjct: 255 IVQTITNGRGGVMPAWG-------PRLSPTTIKALTVYVHTLGGGQ 293
pir||D55582 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Azorhizobium
caulinodans
Length = 292
Score = 275 bits (697), Expect = 3e-73
Identities = 144/286 (50%), Positives = 175/286 (60%), Gaps = 14/286 (4%)
Query: 13 TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
TTGH+WDGI+ELN PLPRWWLWTFYATIIW Y +A PAWP+ S+ T G+LG ++R+
Sbjct: 20 TTGHEWDGIQELNNPLPRWWLWTFYATIIWAFGY-VAYPAWPLVSNY-TSGVLGWNSRSA 77
Query: 73 VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
V + I+ ++ A KL L I +PEL++ R G F CA CHGAG GG
Sbjct: 78 VVEQISDLQKLRAASSAKLANVPLEDIEKNPELLSLARAEGKVAFADNCAPCHGAGGGGA 137
Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
GFP+L D DWL GG + I + HGIR D NM A +L A I V
Sbjct: 138 KGFPNLNDDDWLWGGTLAQIQQTITHGIRSGDDEGHQ--GNMLAF--GSILSKADISNVA 193
Query: 193 QYVLQISGQ-PADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
YV +SG P D A G +IFA NCA+CHGE+ KG E+G+ NLTDGIWLYGGD AT
Sbjct: 194 DYVRSLSGAAPGDTPAAKKGAEIFAANCATCHGENGKGNQELGSKNLTDGIWLYGGDKAT 253
Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
+ TI GRGGVMP+W PRLS I+A+ YVH+LGGGQ
Sbjct: 254 IVQTITNGRGGVMPAWG-------PRLSPTTIKALTVYVHTLGGGQ 292
pir||S39991 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Rhizobium meliloti
>gi|49411|emb|CAA79904.1| (Z21854) FixP [Sinorhizobium
meliloti]
Length = 289
Score = 265 bits (669), Expect = 5e-70
Identities = 126/287 (43%), Positives = 184/287 (63%), Gaps = 11/287 (3%)
Query: 11 VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
V+TTGH+WDGI ELN P+PRWW+++FYATIIW + Y+IA P+WP+ ++ AT G+LG S+R
Sbjct: 14 VETTGHEWDGIRELNNPMPRWWVYSFYATIIWAIGYAIAYPSWPMLTE-ATKGMLGYSSR 72
Query: 71 ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
A+V ++A E++ ++ + I A+P+L + +AGA+ F+ CAQCHG+GA
Sbjct: 73 AEVSVELAAAKAAQAGNLEQIASSSVEEIIANPQLQQFAVSAGASAFKVNCAQCHGSGAA 132
Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDE 190
G GFP+L D DWL GG + IY + HG+R D +T V+ MP ++L P + +
Sbjct: 133 GGQGFPNLNDDDWLWGGKPQEIYQTIAHGVRHAPDGET-RVSEMPPF--GDMLTPELMQQ 189
Query: 191 VVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVA 250
YV+ ++ P+ G+Q+FA+NCASCHG DAKG EMGAPNL D IWL G
Sbjct: 190 TAAYVVSLTQAPSQPHLVQQGKQVFADNCASCHGADAKGNREMGAPNLADAIWLKGEGEQ 249
Query: 251 TLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
+ + ++ + GVMP+W PRL + ++ +A +VHSLGGG+
Sbjct: 250 AVITQMKTPKHGVMPAW-------LPRLGDDTVKQLAVFVHSLGGGE 289
emb|CAB02452.1| (Z80340) FixPc [Rhizobium leguminosarum]
Length = 287
Score = 254 bits (642), Expect = 8e-67
Identities = 123/286 (43%), Positives = 177/286 (61%), Gaps = 11/286 (3%)
Query: 11 VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
V+TTGH+WDGI ELN P+PRWW+WTFYATI+W + Y+IA PA P+ +D AT G+LG S+R
Sbjct: 12 VETTGHEWDGIRELNNPMPRWWVWTFYATIVWALGYAIAYPAIPMITD-ATKGMLGFSSR 70
Query: 71 ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
A++++++ + + + + A + I +D L + GA+ F+ CA CHG+GA
Sbjct: 71 AELQQNLDQAKASQTTLHDLIAAKTVHEIDSDSALREFAIAGGASAFKVNCATCHGSGAS 130
Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDE 190
G GFP+L D DWL GG ++ I + HGIR D DT + MP E+L+P Q +
Sbjct: 131 GGPGFPNLNDDDWLWGGDLDAIQATIAHGIRFDGDTDTH-ASEMPPFA--EVLDPLQTRQ 187
Query: 191 VVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVA 250
V YV ++ P+D A AG+Q+F +NCA+CHG+DAKG EMGAP+L D IWL
Sbjct: 188 VAAYVWGLTNTPSDPGLAEAGKQVFVDNCAACHGDDAKGKAEMGAPDLADAIWLKARGED 247
Query: 251 TLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
+ + + GVMP+W+ RL + ++ + +VHSLGGG
Sbjct: 248 AIIRQVAAPKHGVMPAWA-------GRLGDTTVKELTIFVHSLGGG 286
pir||D47468 cytochrome-c oxidase (EC 1.9.3.1) fixP chain - Bradyrhizobium
japonicum >gi|152202|gb|AAA26206.1| (L07487)
membrane-anchored protein [Bradyrhizobium japonicum]
>gi|3021317|emb|CAA06282.1| (AJ005001) cbb3 oxidase,
subunit III [Bradyrhizobium japonicum]
Length = 290
Score = 252 bits (638), Expect = 2e-66
Identities = 132/286 (46%), Positives = 166/286 (57%), Gaps = 11/286 (3%)
Query: 13 TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
TTGH+WDGI+ELNTPLPRWW+ FY TI+W + Y I PAWP+ S T GL G S+RAD
Sbjct: 15 TTGHEWDGIKELNTPLPRWWVICFYLTIVWAIGYWIVYPAWPLISSNTT-GLFGYSSRAD 73
Query: 73 VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
V ++A ++ L A L + DP L+ R G VF CA CHG+G G
Sbjct: 74 VAVELANLEKIRGDKMAALGAASLADVEKDPALLALARAKGKTVFGDNCAPCHGSGGAGA 133
Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
GFP+L D DWL GG ++ I ++ G R M A D +L+ +I V
Sbjct: 134 KGFPNLNDDDWLWGGTLDQIMQTIQFGARS--GHAKTHEGQMLAFGKDGVLKGDEIVTVA 191
Query: 193 QYVLQISGQPADE-VKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVAT 251
YV +SG P + A G++IF ENC +CHG+ KG EMGAPNLTD IWLYG D A
Sbjct: 192 NYVRSLSGLPTRKGYDAAKGEKIFVENCVACHGDGGKGNQEMGAPNLTDKIWLYGSDEAA 251
Query: 252 LTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
L TI GR GVMP+W + RL + I+A+A YVHSLGGG+
Sbjct: 252 LIETISQGRAGVMPAW-------EGRLDPSTIKAMAVYVHSLGGGK 290
gb|AAC72074.1| (AF054871) cytcbb3 cytochrome c oxidase CytP subunit [Azospirillum
brasilense]
Length = 295
Score = 245 bits (619), Expect = 4e-64
Identities = 124/292 (42%), Positives = 171/292 (58%), Gaps = 13/292 (4%)
Query: 11 VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
V+TTGH+WDG+ ELN PLP+WWL+ FY I W + Y + PAWP+ T GLLG S R
Sbjct: 12 VETTGHEWDGLRELNNPLPKWWLYIFYVCIAWSLVYYVLYPAWPL-GKSYTKGLLGYSQR 70
Query: 71 ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAG 130
++ + +A + + + AT + I + +L+ + G + F CA CHGAG
Sbjct: 71 EELVQKVADGKKAQEKYLTAIAATSVEDIQKNKDLLAFAMAGGRSYFNENCAACHGAGGQ 130
Query: 131 GNTGFPSLLDGDWLHGGAIETIYTNVKHGIR-DPLDPDTLLVANMPAHLTDELLEPAQID 189
G GFP+L D WL GG IY ++HGIR D D + M A D +L QI
Sbjct: 131 GAKGFPTLADDVWLWGGTTADIYKTIQHGIRADDGDTRGTVGIGMTAFGRDGILNRDQIG 190
Query: 190 EVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGL----VEMGAPNLTDGIWLY 245
+V +Y+L ++ + D A G+ ++ ENCA+CHGE+A+G +E+GAP L G WLY
Sbjct: 191 QVAEYILSLNKRSTDAAAAEKGKTVYDENCAACHGENAQGSLAVGMEVGAPPLVTGNWLY 250
Query: 246 GGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
GGD ATL TI GR GVMP+WS RL +A I+++A YVH+LGGG+
Sbjct: 251 GGDKATLVQTITNGRAGVMPAWS-------KRLDDATIKSLAVYVHNLGGGK 295
gb|AAC15890.1| (U76906) di-heme cytochrome c; FixP [Rhizobium etli]
Length = 287
Score = 242 bits (610), Expect = 4e-63
Identities = 125/297 (42%), Positives = 174/297 (58%), Gaps = 12/297 (4%)
Query: 1 MSKKPTTKKEV-QTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDK 59
MS+K + V +TTGH+WDGI+ELN P+PRWW+WTFY TI+ Y+IA PA P+ +
Sbjct: 1 MSQKHIDELSVAETTGHEWDGIQELNNPMPRWWIWTFYVTILCADPYAIAYPAIPMITS- 59
Query: 60 ATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRT 119
AT G LG STRA++++D+ + + A + I ADP L + GA+ F+
Sbjct: 60 ATNGYLGYSTRAELQQDLNLAKSSQTEFHDLIAAKTVEEIDADPALRKFAIAGGASAFKV 119
Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
CA CHG+GA G GFP+L D DWL GG + I + HGIR D D+ + MP
Sbjct: 120 NCAPCHGSGASGGPGFPNLNDDDWLWGGDLNAIQATISHGIRFDGDTDS-HSSEMPPFA- 177
Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
+LEP Q+ +V +V ++ P+D A AG+Q+F +NCA CHGEDAKG VEMGAP+L
Sbjct: 178 -GVLEPIQMKQVAAFVWGLTNTPSDVGLAAAGKQVFFDNCAPCHGEDAKGKVEMGAPDLA 236
Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
D IWL + + + GVMP+W+ RL + + + ++VH GGG
Sbjct: 237 DAIWLKSRGEEPILRQVASPKHGVMPAWA-------ARLGDTTVNELTNFVHRFGGG 286
dbj|BAA75505.1| (AB024290) cb-type cytochrome c oxidase CcoP subunit
[Magnetospirillum magnetotacticum]
Length = 286
Score = 233 bits (588), Expect = 2e-60
Identities = 113/285 (39%), Positives = 167/285 (57%), Gaps = 12/285 (4%)
Query: 13 TTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTRAD 72
TTGH+WDGI+ELNTPLP+WW++ F+AT++W V Y +A PAWP+ ++ T GLLG S+R +
Sbjct: 14 TTGHEWDGIKELNTPLPKWWVYVFWATVVWAVGYWVAYPAWPL-ANGFTKGLLGYSSRGE 72
Query: 73 VEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGN 132
++ ++A + A K+ A+D+ I D +L+ Y G F C CHG G G
Sbjct: 73 LDNELAAQKKSRSAWLSKIEASDVAVIEKDKDLLRYAMAGGKIAFNENCGACHGVGGVGA 132
Query: 133 TGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVV 192
G+P+L D +WL GG + I +K G+R+ + MP D +L+P QI V
Sbjct: 133 YGYPTLADDEWLWGGTLADIEQTIKFGVRNA--NANSRQSEMPKFGVDGVLKPEQISSVA 190
Query: 193 QYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATL 252
YVL ++ + K +AG+ ++AENCA CH ED G+ +GAP L + IWLY G +
Sbjct: 191 DYVLSLASKA--PAKGSAGETVYAENCAVCHAEDGSGMAAVGAPALNNQIWLYKGTKDAI 248
Query: 253 TSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
+ + + G MP+WS RL + I+ +A YVH+LGGG+
Sbjct: 249 VAQVTKPKHGSMPAWS-------ERLDASTIKMLAVYVHNLGGGK 286
gb|AAF42068.1| (AE002522) cytochrome c oxidase, subunit III [Neisseria
meningitidis]
Length = 365
Score = 178 bits (446), Expect = 7e-44
Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 29/287 (10%)
Query: 3 KKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATP 62
K+P +EVQTTGH+WDGI E + PLPRWW W T ++G+ Y + P +
Sbjct: 38 KRPKKGEEVQTTGHEWDGIAEYDNPLPRWWFWLCVLTWLFGIGYLVMYPGVGDYK----- 92
Query: 63 GLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCA 122
GLL ++ EK++ K E + K + +A DP+ +N +F T+C
Sbjct: 93 GLLKWTSHNQYEKEVKKADEQYGKLYAKFADMPIEKVAKDPQAKQIAQN----LFNTYCI 148
Query: 123 QCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDEL 182
QCHG+ A G+ GFP+L D DWL GG + I+ ++ G VA MPA
Sbjct: 149 QCHGSDAKGSKGFPNLTDSDWLWGGDPDKIHETIEKG----------RVATMPA--WGPA 196
Query: 183 LEPAQIDEVVQYVLQIS---GQPADEVKATAGQQIFA---ENCASCHGEDAKGLVEMGAP 236
L + +V YV+ +S GQ DE +A GQ +F+ NC +CHG+ +G+ +G P
Sbjct: 197 LGEEGVKDVAHYVMSLSKPEGQ-YDEERAARGQALFSGPPANCFTCHGDKGQGIQGLG-P 254
Query: 237 NLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQI 283
NLTD +WL+GG ++ TI GR MP+W D K + A +
Sbjct: 255 NLTDDVWLWGGTQKSIIETITNGRSSQMPAWGHFLDKDKLHIMTAYV 301
emb|CAB85197.1| (AL162757) putative cytochrome c [Neisseria meningitidis]
Length = 365
Score = 178 bits (446), Expect = 7e-44
Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 29/287 (10%)
Query: 3 KKPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATP 62
K+P +EVQTTGH+WDGI E + PLPRWW W T ++G+ Y + P +
Sbjct: 38 KRPKKGEEVQTTGHEWDGIAEYDNPLPRWWFWLCVLTWLFGIGYLVMYPGVGDYK----- 92
Query: 63 GLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCA 122
GLL ++ EK++ K E + K + +A DP+ +N +F T+C
Sbjct: 93 GLLKWTSHNQYEKEVKKADEQYGKLYAKFADMPIEKVAKDPQAKQIAQN----LFNTYCI 148
Query: 123 QCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDEL 182
QCHG+ A G+ GFP+L D DWL GG + I+ ++ G VA MPA
Sbjct: 149 QCHGSDAKGSKGFPNLTDSDWLWGGDPDKIHETIEKG----------RVATMPA--WGPA 196
Query: 183 LEPAQIDEVVQYVLQIS---GQPADEVKATAGQQIFA---ENCASCHGEDAKGLVEMGAP 236
L + +V YV+ +S GQ DE +A GQ +F+ NC +CHG+ +G+ +G P
Sbjct: 197 LGEEGVKDVAHYVMSLSKPEGQ-YDEERAARGQALFSGPPANCFTCHGDKGQGIQGLG-P 254
Query: 237 NLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQI 283
NLTD +WL+GG ++ TI GR MP+W D K + A +
Sbjct: 255 NLTDDVWLWGGTQKSIIETITNGRSSQMPAWGHFLDKDKLHIMTAYV 301
emb|CAA04804.1| (AJ001522) FixP protein [Rhizobium leguminosarum]
Length = 228
Score = 174 bits (437), Expect = 8e-43
Identities = 90/237 (37%), Positives = 136/237 (56%), Gaps = 10/237 (4%)
Query: 60 ATPGLLGSSTRADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRT 119
AT G+LG S+RA++++++ + + + + A + I +D L + GA+ F+
Sbjct: 1 ATKGMLGFSSRAELQQNLDQAKVSQTTLRDLIAAKTVHEIDSDSALREFAVAGGASAFKV 60
Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
CA CHG+GA G GFP+L D DWL GG ++ I + HGIR D DT + MP
Sbjct: 61 NCAPCHGSGASGGPGFPNLNDDDWLWGGDLDAIQATIAHGIRFNEDTDTH-ASEMPPFA- 118
Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
++L+P Q +V YV ++ P+D A G+Q+F +NCA+CHG+DAKG EMGAP+L
Sbjct: 119 -DVLDPLQTRQVAAYVWGLTNTPSDPGLAEDGKQVFVDNCAACHGDDAKGKAEMGAPDLA 177
Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
D IWL +T + + GVMP+W+ RL + ++ + +VHSLGGG
Sbjct: 178 DAIWLKARGEDAITRQVAAPKHGVMPAWA-------GRLGDTTVKELTIFVHSLGGG 227
gb|AAC44983.1| (AF202779) CcoP [Rhodobacter sphaeroides]
Length = 143
Score = 161 bits (402), Expect = 1e-38
Identities = 82/151 (54%), Positives = 102/151 (67%), Gaps = 8/151 (5%)
Query: 147 GAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPADEV 206
G IE+I+T V HGIR+ + D + MP D LL+ QI +VV+YVLQISGQ D
Sbjct: 1 GDIESIHTTVTHGIRNTTE-DEARYSEMPRFGADGLLDSTQISQVVEYVLQISGQDHDAA 59
Query: 207 KATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPS 266
+ G IFA+NCA+CHGED G ++GAPNLTD IWLYGGD AT+T T+ Y R GVMP+
Sbjct: 60 LSAEGATIFADNCAACHGEDGTGSRDVGAPNLTDAIWLYGGDRATVTETVTYARFGVMPN 119
Query: 267 WSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
W+ RL+EA IR+VA YVH LGGG+
Sbjct: 120 WN-------ARLTEADIRSVAVYVHGLGGGE 143
Score = 39.1 bits (89), Expect = 0.054
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 113 GAAVFRTWCAQCHGAGAGGN--TGFPSLLDGDWLHGGAIETIYTNVKH 158
GA +F CA CHG G+ G P+L D WL+GG T+ V +
Sbjct: 64 GATIFADNCAACHGEDGTGSRDVGAPNLTDAIWLYGGDRATVTETVTY 111
dbj|BAA89395.1| (AB025342) ORF21 [Moritella marina]
Length = 488
Score = 129 bits (322), Expect = 3e-29
Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 40/294 (13%)
Query: 4 KPTTKKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPG 63
+ T + T Q+DGI+E + P+P+ + + I + Y + P+ + G
Sbjct: 28 RKTKTADSNKTVEQFDGIDEKDAPIPKVFFVAYLIAFIGAIVYVLLYPSLASWK-----G 82
Query: 64 LLGSSTRADVEKDIAKFAEMNKAVEEKLVA-TD---LTAIAADPELVTYTRNAGAAVFRT 119
+G + D +AK ++N + + A TD T + DP ++ +G ++F
Sbjct: 83 FIGWTENDDAY--VAKSIDINNNINAIINANTDEQVFTLLQKDPLVL----QSGKSLFGD 136
Query: 120 WCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLT 179
C+ CHG A G +PSL+D DWL+GG+ + +YT + +G + MPA
Sbjct: 137 NCSACHGQDAKGQYNYPSLVDKDWLYGGSPQDVYTTIHNGRK----------GKMPAW-- 184
Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLT 239
+L IDE+ QYV +++ P K+ A +F NC+SCHG++A+G +GAPNLT
Sbjct: 185 KGVLSGKDIDELTQYVSELNKGP---FKSNA---LFDANCSSCHGKEAQGSHSVGAPNLT 238
Query: 240 DGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
+ IWL+G A + I+ G MP + RLS QI ++ SY+ SL
Sbjct: 239 NDIWLHGSTNADIKRNIENGMYNEMPDFG-------QRLSRNQILSLTSYIVSL 285
gb|AAB58267.1| (U90521) cbb3-type cytochrome oxidase component FixP [Rhizobium
leguminosarum bv. viciae]
Length = 107
Score = 103 bits (255), Expect = 2e-21
Identities = 44/95 (46%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 11 VQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSSTR 70
V+TTGH+WDGI ELN P+PRWW+WTFYATI+W + Y+IA PA P+ +D AT G+LG S+R
Sbjct: 12 VETTGHEWDGIRELNNPMPRWWVWTFYATIVWALGYAIAYPAIPMITD-ATKGMLGYSSR 70
Query: 71 ADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPEL 105
A++++++ + + + + A + I +D L
Sbjct: 71 AELQQNLDQAKASQTTLHDLIAAKTVHEIDSDSAL 105
emb|CAB73909.1| (AL139078) cb-type cytochrome C oxidase subunit III [Campylobacter
jejuni]
Length = 287
Score = 76.5 bits (185), Expect = 3e-13
Identities = 80/298 (26%), Positives = 119/298 (39%), Gaps = 58/298 (19%)
Query: 8 KKEVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGS 67
K E + + H WDGI E +P W F+ TI+W + Y + +P+ S +
Sbjct: 40 KGESELSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLW--GYPLNSFSSI-----G 92
Query: 68 STRADVEKDIAKFAEM--NKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCH 125
+V KF E N + E+K+ G +F C+ CH
Sbjct: 93 QYNEEVATHNTKFEEKFKNLSPEDKIAM-------------------GQNIFLVQCSACH 133
Query: 126 GAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEP 185
G G G L+ W G+ E I +KHG + P ++ + +E
Sbjct: 134 GITGDGINGKAQNLN-IW---GSEEGIINVIKHGSKGMNFPGGEMLGAADLGVAEE---- 185
Query: 186 AQIDEVVQYV---LQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGI 242
I + YV L + A+E G++ +A CA+CHGED KG M P+LT
Sbjct: 186 -DIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA-TCAACHGEDGKGQDGM-FPDLTK-- 240
Query: 243 WLYGGDVATLTSTIQYGRG---GVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQ 297
G A + + G+ G MPS+ P L++ Q AV YV SL G+
Sbjct: 241 ---YGSAAFVVDVLHSGKAGFIGTMPSF--------PTLNDIQKEAVGEYVISLSRGE 287
dbj|BAA33529.1| (AB018105) cb-type cytochrome c oxidase subunit III [Helicobacter
pylori]
Length = 292
Score = 67.9 bits (163), Expect = 1e-10
Identities = 73/287 (25%), Positives = 114/287 (39%), Gaps = 44/287 (15%)
Query: 10 EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
E+ GH DGI E +P W+ +F TI+W Y +P+ S G
Sbjct: 42 ELMENGHLIDGIGEFANNVPVGWIASFMCTIVWAFWYFFF--GYPLNSFSQI-GQYNEEV 98
Query: 70 RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
+A +K AK+ + + ELV + G +F C+QCHG A
Sbjct: 99 KAHNQKFEAKWKNLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137
Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
G G L + G E I +KHG + L MPA DE A
Sbjct: 138 EGLHGSAQNL----VRWGKEEGIMDTIKHGSKGM----DYLAGEMPAMELDEKDAKAIAS 189
Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVEMGAPNLTDGIWLYGGD 248
V+ + + ++ G+++F + C CHG D KGL E L + YG +
Sbjct: 190 YVMAEISSVKKTKNPQL-IDKGKELFESMGCTGCHGNDGKGLQENQV--LAADLTTYGTE 246
Query: 249 --VATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
+ + + + G G MPS+ + S+ Q++A+ ++ SL
Sbjct: 247 NFLRNILTHGKKGNIGHMPSFKY------KNFSDLQVKALPEFIQSL 287
pir||B71970 cytochrome oxidase (cbb3-type) - Helicobacter pylori (strain J99)
>gi|4154645|gb|AAD05714.1| (AE001452) Cytochrome oxidase
(CBB3-TYPE) [Helicobacter pylori J99]
Length = 292
Score = 65.6 bits (157), Expect = 6e-10
Identities = 77/290 (26%), Positives = 118/290 (40%), Gaps = 50/290 (17%)
Query: 10 EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
E+ GH DGI E +P W+ +F I+W Y +P+ S + G
Sbjct: 42 ELMENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFF--GYPL-SSFSQIGQYNEEV 98
Query: 70 RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
+A +K AK+ + + ELV + G +F C+QCHG A
Sbjct: 99 KAHNQKFEAKWKHLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137
Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
G G L L E I +KHG + P MPA DE + I
Sbjct: 138 DGLHGSAQNL----LRWDKEEGIMDTIKHGSKGMDYP----AGEMPAIEMDE-KDAKAIA 188
Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVE--MGAPNLTDGIWLYG 246
V L + + G+++F + CA CHG D KGL E + A +LT YG
Sbjct: 189 SYVMAELSSVKKTKNPQLIDKGKELFESMGCAGCHGNDGKGLQENQVFAADLT----TYG 244
Query: 247 GDVATLTSTIQYGRG---GVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
+ + L + + +G+ G MPS+ + S+ Q++A+ ++ SL
Sbjct: 245 TE-SFLRNILTHGKKGNIGRMPSFKY------KNFSDLQVKALVEFIKSL 287
pir||C64538 cytochrome-c oxidase (EC 1.9.3.1) chain fixP - Helicobacter pylori
(strain 26695) >gi|2313233|gb|AAD07216.1| (AE000536)
cytochrome c oxidase, diheme subunit, membrane-bound
(fixP) [Helicobacter pylori 26695]
Length = 286
Score = 61.3 bits (146), Expect = 1e-08
Identities = 74/282 (26%), Positives = 112/282 (39%), Gaps = 48/282 (17%)
Query: 10 EVQTTGHQWDGIEELNTPLPRWWLWTFYATIIWGVAYSIAMPAWPIFSDKATPGLLGSST 69
E+ GH DGI E +P W+ +F TI+W Y +P+ S G
Sbjct: 42 ELVENGHLIDGIGEFANNVPVGWIASFMCTIVWAFWYFFF--GYPLNSFSQI-GQYNEEV 98
Query: 70 RADVEKDIAKFAEMNKAVEEKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGA 129
+A +K AK+ + + ELV + G +F C+QCHG A
Sbjct: 99 KAHNQKFEAKWKHLGQ-----------------KELV----DMGQGIFLVHCSQCHGITA 137
Query: 130 GGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQID 189
G G L + G E I +KHG + L MPA DE + I
Sbjct: 138 EGLHGSAQNL----VRWGKEEGIMDTIKHGSKGM----DYLAGEMPAMELDE-KDAKAIA 188
Query: 190 EVVQYVLQISGQPADEVKATAGQQIF-AENCASCHGEDAKGLVE--MGAPNLTDGIWLYG 246
V L + + G+++F + C CHG D KGL E + A +LT YG
Sbjct: 189 SYVMAELSSVKKTKNPQLIDKGKELFESMGCTGCHGNDGKGLQENQVFAADLT----AYG 244
Query: 247 GD--VATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAV 286
+ + + + + G G MPS+ + S+ Q++A+
Sbjct: 245 TENFLRNILTHGKKGNIGHMPSFKY------KNFSDLQVKAL 280
pir||T35532 qcrC protein - Streptomyces coelicolor >gi|4539219|emb|CAB39877.1|
(AL049497) cytochrome c heme-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 269
Score = 46.1 bits (107), Expect = 4e-04
Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 37/207 (17%)
Query: 101 ADPELVTYTRNAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGI 160
AD + + G ++ CA CHG G G + PSL+ G + V G
Sbjct: 40 ADESAQSLAIDEGKKLYAVGCASCHGTGGQGTSDGPSLV------GVGAAAVDFQVGTGR 93
Query: 161 RDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA---------DEVKATAG 211
P A +P + A+ID++ Y+ + PA + G
Sbjct: 94 MPAQQPG----AQVPKKKV--IYSQAEIDQLAAYIASLGAGPAIPSEEKYGPEGADIAKG 147
Query: 212 QQIFAENCASCHGEDAKGLVEMGAPNLTDGIW---LYGGDVATLTSTIQYGRGGVMPSWS 268
++F NCA CH KG GA LT G + L G D + +Q G MPS+
Sbjct: 148 GELFRTNCAQCHNFTGKG----GA--LTHGKYAPSLEGVDPKHIYEAMQTGPQN-MPSF- 199
Query: 269 WAADGAKPRLSEAQIRAVASYVHSLGG 295
LSE + + +Y+ ++ G
Sbjct: 200 -----PDTTLSEQNKKDIIAYLDAVNG 221
Score = 43.0 bits (99), Expect = 0.004
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 201 QPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGR 260
+ A + G++++A CASCHG +G +DG L G A + + GR
Sbjct: 42 ESAQSLAIDEGKKLYAVGCASCHGTGGQGT--------SDGPSLVGVGAAAVDFQVGTGR 93
Query: 261 GGVMPSWSWAADGAKPRL--SEAQIRAVASYVHSLGGG 296
MP+ A K ++ S+A+I +A+Y+ SLG G
Sbjct: 94 ---MPAQQPGAQVPKKKVIYSQAEIDQLAAYIASLGAG 128
emb|CAB72530.1| (AL139074) putative cytochrome c [Campylobacter jejuni]
Length = 347
Score = 43.8 bits (101), Expect = 0.002
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 196 LQISGQPADEVKATAGQQIFAENCASCHGEDAKGL----VEMGAPNLTDGIWLY--GGDV 249
+ +PAD V+ G+++F ENC +CHGE G+ E G+ +L + +Y GG +
Sbjct: 192 MNFPNRPADPVR---GKKLFEENCVACHGERGLGVKNDNYEQGSGHLYPSLLIYPDGGHM 248
Query: 250 ATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHS 292
A + ++ + MP + A P LS+ +A+YV++
Sbjct: 249 AMIPFLARFLK-SAMP---FGASADNPILSDEDALDIAAYVNT 287
sp|Q10386|QCRC_MYCTU UBIQUINOL-CYTOCHROME C REDUCTASE CYTOCHROME C SUBUNIT
>gi|7477954|pir||C70784 probable cyoA - Mycobacterium
tuberculosis (strain H37RV) >gi|1237047|emb|CAA94263.1|
(Z70283) qcrC [Mycobacterium tuberculosis]
Length = 280
Score = 43.8 bits (101), Expect = 0.002
Identities = 29/88 (32%), Positives = 43/88 (47%), Gaps = 12/88 (13%)
Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWA 270
G+Q+F +C SCHG + +G+ + G L G A + + GR MP+
Sbjct: 65 GKQLFDTSCVSCHGANLQGVPDHGPS-------LIGVGEAAVYFQVSTGR---MPAMRGE 114
Query: 271 ADGAK--PRLSEAQIRAVASYVHSLGGG 296
A + P EAQI A+ +YV + GGG
Sbjct: 115 AQAPRKDPIFDEAQIDAIGAYVQANGGG 142
Score = 41.4 bits (95), Expect = 0.011
Identities = 45/152 (29%), Positives = 54/152 (34%), Gaps = 25/152 (16%)
Query: 92 VATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIET 151
V T +A E + G +F T C CHGA G P G L G
Sbjct: 44 VLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANL---QGVPD--HGPSLIGVGEAA 98
Query: 152 IYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEV 206
+Y V G R P + A D + + AQID + YV G P D
Sbjct: 99 VYFQVSTG-RMP-----AMRGEAQAPRKDPIFDEAQIDAIGAYVQANGGGPTVVRNPDGS 152
Query: 207 KAT---------AGQQIFAENCASCHGEDAKG 229
AT G +F NCASCH KG
Sbjct: 153 IATQSLRGNDLGRGGDLFRLNCASCHNFTGKG 184
sp|O69583|QCRC_MYCLE UBIQUINOL-CYTOCHROME C REDUCTASE CYTOCHROME C SUBUNIT
>gi|3080504|emb|CAA18702.1| (AL022602) QcrC protein
[Mycobacterium leprae]
Length = 164
Score = 43.4 bits (100), Expect = 0.003
Identities = 28/88 (31%), Positives = 45/88 (50%), Gaps = 12/88 (13%)
Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWA 270
G+Q+F +C SCHG + +G+ + G L G A + + GR MP+
Sbjct: 74 GKQLFDTSCVSCHGANLQGVPDHGPS-------LIGVGEAAVYFQVSTGR---MPAMRGE 123
Query: 271 ADGAK--PRLSEAQIRAVASYVHSLGGG 296
A A+ P +E+QI A+ +Y+ + GGG
Sbjct: 124 AQVARKDPIFNESQIDAIGAYIQANGGG 151
pir||H54235 cb-type cytochrome-c oxidase 28K chain - Rhodobacter capsulatus
(fragment) >gi|545951|gb|AAB30232.1| cb-type cytochrome
c oxidase 28 kda subunit, cyt cb=fixP product homolog
[Rhodobacter capsulatus, pMTo-404/MT-RBC1 cells, Peptide
Partial, 22 aa, segment 2 of 3]
Length = 22
Score = 43.0 bits (99), Expect = 0.004
Identities = 21/22 (95%), Positives = 22/22 (99%)
Query: 86 AVEEKLVATDLTAIAADPELVT 107
AVE+KLVATDLTAIAADPELVT
Sbjct: 1 AVEDKLVATDLTAIAADPELVT 22
sp|P11448|CYC6_BRYMA CYTOCHROME C6 (SOLUBLE CYTOCHROME F) (CYTOCHROME C553)
>gi|65568|pir||CCBM6 cytochrome c6 - green alga
(Bryopsis maxima) >gi|359742|prf||1313302A cytochrome c6
[Bryopsis maxima]
Length = 88
Score = 41.8 bits (96), Expect = 0.008
Identities = 27/82 (32%), Positives = 41/82 (49%), Gaps = 10/82 (12%)
Query: 211 GQQIFAENCASCHGEDAKGLVEMGAPNLTDGI-WLYGG-DVATLTSTIQYGRGGVMPSWS 268
G +F NCA+CH A + + N D +L GG + +TS ++ G+ G MP+WS
Sbjct: 7 GADVFTGNCAACHAGGANSVEPLKTLNKEDVTKYLDGGLSIEAITSQVRNGK-GAMPAWS 65
Query: 269 WAADGAKPRLSEAQIRAVASYV 290
RL + +I V +YV
Sbjct: 66 -------DRLDDEEIDGVVAYV 80
Score = 32.8 bits (73), Expect = 4.1
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 113 GAAVFRTWCAQCHGAGAGGNTGFPSLLDGD---WLHGG-AIETIYTNVKHGIRDPLDPDT 168
GA VF CA CH GA +L D +L GG +IE I + V++G
Sbjct: 7 GADVFTGNCAACHAGGANSVEPLKTLNKEDVTKYLDGGLSIEAITSQVRNG--------- 57
Query: 169 LLVANMPAHLTDELLEPAQIDEVVQYVLQ 197
MPA + L+ +ID VV YV +
Sbjct: 58 --KGAMPA--WSDRLDDEEIDGVVAYVFK 82
gb|AAB34245.1| cytochrome cd1-nitrite reductase [Paracoccus denitrificans,
Peptide, 567 aa]
Length = 567
Score = 41.8 bits (96), Expect = 0.008
Identities = 36/118 (30%), Positives = 51/118 (42%), Gaps = 17/118 (14%)
Query: 179 TDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQIFAENCASCHGEDAKGLVEM 233
TD EP+ +D + Q + G P + + +I+ E CA CHG KG
Sbjct: 21 TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKIYFERCAGCHGVLRKGATGK 79
Query: 234 G-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
P+LT + G D L S I YG MP+W G LS Q+ +A+Y+
Sbjct: 80 ALTPDLTRDL---GFDY--LQSFITYGSPAGMPNW-----GTSGELSAEQVDLMANYL 127
sp|Q47945|CYCA_GLUSU ALCOHOL DEHYDROGENASE CYTOCHROME C SUBUNIT PRECURSOR (CYTOCHROME
C-553) (C553) (G3-ADH SUBUNIT II)
>gi|148734|gb|AAA24935.1| (M58760) cytochrome c-553
[Gluconobacter suboxydans] >gi|2055287|dbj|BAA19754.1|
(D86375) cytochrome-c subunit precursor of
membrane-bound alcohol dehydrogenase [Gluconobacter
suboxydans] >gi|382955|prf||1901325A cytochrome c553
[Gluconobacter suboxydans]
Length = 478
Score = 41.4 bits (95), Expect = 0.011
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 139 LDGDWLHGGAIETIYTNVKHGIRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQI 198
+D + GG + + + +H D L + +MPA E Q D +L
Sbjct: 268 IDHSAVFGGMADVVAYSTQHWSDDDLRATAKYLKSMPA--VPEGKNLGQDDGQTTALLNK 325
Query: 199 SGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQY 258
GQ AG +++ NCA CH D G+ M P L + D +L + + +
Sbjct: 326 GGQ------GNAGAEVYLHNCAICHMNDGTGVNRM-FPPLAGNPVVITDDPTSLANVVAF 378
Query: 259 GRGGVMPSWSWAAD-----GAKPRLSEAQIRAVASYV 290
GG++P + A G K LS+ ++ V +++
Sbjct: 379 --GGILPPTNSAPSAVAMPGFKNHLSDQEMADVVNFM 413
sp|P24474|NIRS_PSEAE NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
>gi|279447|pir||OSPSA Pseudomonas cytochrome oxidase (EC
1.9.3.2) precursor - Pseudomonas aeruginosa
>gi|45358|emb|CAA34471.1| (X16452) nitrite reductase
(NAD(P)H) [Pseudomonas aeruginosa]
>gi|226476|prf||1514116A nitrite reductase [Pseudomonas
aeruginosa]
Length = 568
Score = 41.4 bits (95), Expect = 0.011
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 176 AHLTDELLEPAQIDEVVQ-----YVLQISGQP-ADEVKATAGQQIFAENCASCHGEDAKG 229
AH D++ Q +V++ +G P E + +QI+ + CA CHG KG
Sbjct: 23 AHAKDDMKAAEQYQGAASAVDPAHVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKG 82
Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
G P LT I G L + I YG MP+W G+ LS+ QI +A Y
Sbjct: 83 AT--GKP-LTPDITQQRGQ-QYLEALITYGTPLGMPNW-----GSSGELSKEQITLMAKY 133
Query: 290 V 290
+
Sbjct: 134 I 134
pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
>gi|2781089|pdb|1NIR|B Chain B, Oxydized Nitrite
Reductase From Pseudomonas Aeruginosa
>gi|4929916|pdb|1BL9|A Chain A, Conformational Changes
Occurring Upon Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa >gi|4929917|pdb|1BL9|B Chain B,
Conformational Changes Occurring Upon Reduction In
Nitrite Reductase From Pseudomonas Aeruginosa
>gi|4930068|pdb|1NNO|A Chain A, Conformational Changes
Occurring Upon No Binding In Nitrite Reductase From
Pseudomonas Aeruginosa >gi|4930069|pdb|1NNO|B Chain B,
Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
>gi|5542315|pdb|1N15|A Chain A, Following The C Heme
Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa >gi|5542316|pdb|1N15|B Chain B, Following The
C Heme Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa >gi|5542317|pdb|1N50|A Chain A, Following The
C Heme Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa >gi|5542318|pdb|1N50|B Chain B, Following The
C Heme Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa >gi|5542319|pdb|1N90|A Chain A, Following The
C Heme Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa >gi|5542320|pdb|1N90|B Chain B, Following The
C Heme Reduction In Nitrite Reductase From Pseudomonas
Aeruginosa
Length = 543
Score = 41.0 bits (94), Expect = 0.014
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 194 YVLQISGQP-ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATL 252
+V++ +G P E + +QI+ + CA CHG KG G P LT I G L
Sbjct: 21 HVVRTNGAPDMSESEFNEAKQIYFQRCAGCHGVLRKGAT--GKP-LTPDITQQRGQ-QYL 76
Query: 253 TSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
+ I YG MP+W G+ LS+ QI +A Y+
Sbjct: 77 EALITYGTPLGMPNW-----GSSGELSKEQITLMAKYI 109
prf||2009317B alcohol dehydrogenase [Acetobacter aceti]
Length = 472
Score = 40.6 bits (93), Expect = 0.018
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 203 ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGG 262
++ AG + + E CA CH D G+ M P + + + + + GG
Sbjct: 315 SNNFSGNAGAKTYVEQCAICHRNDGGGVARMFPPLAGNPVVVSDNPTSVAHIVVD---GG 371
Query: 263 VMPSWSWAADGA-----KPRLSEAQIRAVASYVHSLGGGQ 297
V+P +WA K LS+ QI V +++ S G +
Sbjct: 372 VLPPTNWAPSAVAMPDYKNILSDQQIADVVNFIRSAWGNR 411
gb|AAC21674.1| (AF002222) PvcD [Pseudomonas aeruginosa]
Length = 215
Score = 40.6 bits (93), Expect = 0.018
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 113 GAAVFRTWCAQCHGAGAGG----NTGFPSL--LDGDWLHGGAIETIYTNVKHGIRDPLDP 166
G A+ + C++CH G N +P L LD ++L+ + IY D
Sbjct: 36 GKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREYLY----KQIY-----------DL 80
Query: 167 DTLLVANMPAHLTDELLEPAQIDEVVQYVL---QISGQP--ADEVKATAGQQIFAEN--- 218
T N + E L A + V + +G+ AD + G+Q+F
Sbjct: 81 KTQRRRNPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPRQRERGRQLFENGLAQ 140
Query: 219 -----CASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
C +CHG A+GL + AP L G W +AT + G+ G + A G
Sbjct: 141 RGVPPCVTCHGPAAQGLAALKAPRLA-GQW--AEYLATQLHGFRDGKRGNSATMRAVAGG 197
Query: 274 AKPRLSEAQIRAVASYVHSLG 294
L ++ I+A+A Y+ SLG
Sbjct: 198 ----LEDSHIQALAGYLGSLG 214
sp|P08197|CYC6_CHLRE CYTOCHROME C6 PRECURSOR (CYTOCHROME C552) >gi|2144284|pir||CCKM6R
cytochrome c6 precursor - Chlamydomonas reinhardtii
>gi|167415|gb|AAB00729.1| (M67448) cytochrome c-6
[Chlamydomonas reinhardtii]
Length = 148
Score = 40.6 bits (93), Expect = 0.018
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 24/121 (19%)
Query: 176 AHLTDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCH--GEDA----KG 229
A LT L A I +L A G Q+F NCA+CH G ++ K
Sbjct: 35 APLTSALAVTASI------LLTTGAASASAADLALGAQVFNGNCAACHMGGRNSVMPEKT 88
Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
L + DG G V ++ ++ G+ G MP+W+ RLSE +I+AVA Y
Sbjct: 89 LDKAALEQYLDG----GFKVESIIYQVENGK-GAMPAWA-------DRLSEEEIQAVAEY 136
Query: 290 V 290
V
Sbjct: 137 V 137
pir||B49340 membrane-bound alcohol dehydrogenase (EC 1.1.-.-) cytochrome c
precursor - Acetobacter pasteurianus
>gi|452587|dbj|BAA02993.1| (D13893) cytochrome c subunit
of alcohol dehydrogenase [Acetobacter pasteurianus]
Length = 472
Score = 40.6 bits (93), Expect = 0.018
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 203 ADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGG 262
++ AG + + E CA CH D G+ M P + + + + + GG
Sbjct: 315 SNNFSGNAGAKTYVEQCAICHRNDGGGVARMFPPLAGNPVVVSDNPTSVAHIVVD---GG 371
Query: 263 VMPSWSWAADGA-----KPRLSEAQIRAVASYVHSLGGGQ 297
V+P +WA K LS+ QI V +++ S G +
Sbjct: 372 VLPPTNWAPSAVAMPDYKNILSDQQIADVVNFIRSAWGNR 411
sp|Q51700|NIRS_PARDE NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
>gi|452453|gb|AAA93118.1| (U05002) cytochrome cd1
nitrite reductase [Paracoccus denitrificans]
>gi|1093923|prf||2105165A cytochrome cd1 nitrite
reductase [Paracoccus denitrificans]
Length = 596
Score = 40.2 bits (92), Expect = 0.024
Identities = 35/118 (29%), Positives = 51/118 (42%), Gaps = 17/118 (14%)
Query: 179 TDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQIFAENCASCHGEDAKGLVEM 233
TD EP+ +D + Q + G P + + +I+ E CA CHG KG
Sbjct: 50 TDNRYEPS-LDNLAQQDVAALGAPEGIPALSDAQYNEANKIYFERCAGCHGVLRKGATGK 108
Query: 234 G-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
P+LT + G D L S I YG MP+W G L+ Q+ +A+Y+
Sbjct: 109 ALTPDLTRDL---GFDY--LQSFITYGSPAGMPNW-----GTSGELTAEQVDLMANYL 156
sp|P72181|NIRS_PARDT NITRITE REDUCTASE PRECURSOR (CYTOCHROME CD1) (CYTOCHROME OXIDASE)
>gi|1654415|gb|AAB17878.1| (U75413) cytochrome cd1
nitrite reductase [Paracoccus denitrificans]
Length = 596
Score = 39.9 bits (91), Expect = 0.032
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 160 IRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQI 214
+ P DP L + TD EP+ +D + Q + G P + + +I
Sbjct: 33 VAPPKDPAAALEDHKTR--TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKI 89
Query: 215 FAENCASCHGEDAKGLVEMG-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
+ E CA CHG KG P+LT + G D L S I Y MP+W G
Sbjct: 90 YFERCAGCHGVLRKGATGKALTPDLTRDL---GFDY--LQSFITYASPAGMPNW-----G 139
Query: 274 AKPRLSEAQIRAVASYV 290
LS Q+ +A+Y+
Sbjct: 140 TSGELSAEQVDLMANYL 156
pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
>gi|2624770|pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite
Reductase, Reduced Form >gi|2914159|pdb|1AOM|A Chain A,
Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase >gi|2914160|pdb|1AOM|B Chain B, Substrate And
Product Bound To Cytochrome Cd1 Nitrite Reductase
>gi|2914161|pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite
Reductase With Substrate And Product Bound
>gi|2914162|pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite
Reductase With Substrate And Product Bound
>gi|5822312|pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite
Reductase, Oxidised Form >gi|5822313|pdb|1QKS|B Chain B,
Cytochrome Cd1 Nitrite Reductase, Oxidised Form
Length = 567
Score = 39.9 bits (91), Expect = 0.032
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 160 IRDPLDPDTLLVANMPAHLTDELLEPAQIDEVVQYVLQISGQPA-----DEVKATAGQQI 214
+ P DP L + TD EP+ +D + Q + G P + + +I
Sbjct: 4 VAPPKDPAAALEDHKTR--TDNRYEPS-LDNLAQQDVAAPGAPEGVTALSDAQYNEANKI 60
Query: 215 FAENCASCHGEDAKGLVEMG-APNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADG 273
+ E CA CHG KG P+LT + G D L S I Y MP+W G
Sbjct: 61 YFERCAGCHGVLRKGATGKALTPDLTRDL---GFDY--LQSFITYASPAGMPNW-----G 110
Query: 274 AKPRLSEAQIRAVASYV 290
LS Q+ +A+Y+
Sbjct: 111 TSGELSAEQVDLMANYL 127
sp|P29899|CYCL_PARDE CYTOCHROME C-L PRECURSOR (CYTOCHROME C551I) (C552)
>gi|94688|pir||B41377 cytochrome c-L precursor -
Paracoccus denitrificans >gi|150591|gb|AAA25583.1|
(M57684) cytochrome c-551i [Paracoccus denitrificans]
Length = 177
Score = 39.9 bits (91), Expect = 0.032
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATA--GQQIFAENCASCHGEDAKGLVEMGAPN 237
D+ +E + E V++ L+ +E ++++A C+ CHG A+G + P
Sbjct: 38 DDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKI---GPG 94
Query: 238 LTDGIWLYGGDVAT--LTSTIQYGRGGVM-PSW 267
L D W Y G+ L ST+ G G M P W
Sbjct: 95 LNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW 127
pdb|1CYJ| Cytochrome C6 >gi|1310884|pdb|1CYI| Cytochrome C6
Length = 90
Score = 39.9 bits (91), Expect = 0.032
Identities = 30/86 (34%), Positives = 44/86 (50%), Gaps = 18/86 (20%)
Query: 211 GQQIFAENCASCH--GEDA----KGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVM 264
G Q+F NCA+CH G ++ K L + DG G V ++ ++ G+ G M
Sbjct: 6 GAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDG----GFKVESIIYQVENGK-GAM 60
Query: 265 PSWSWAADGAKPRLSEAQIRAVASYV 290
P+W+ RLSE +I+AVA YV
Sbjct: 61 PAWA-------DRLSEEEIQAVAEYV 79
sp|Q56247|C551_BACP3 CYTOCHROME C-551 PRECURSOR (C551) >gi|1072836|pir||S43726
cytochrome c551 precursor - thermophilic bacterium PS-3
>gi|402789|emb|CAA44835.1| (X63125) cytochrome c-551
[thermophilic bacterium PS3]
Length = 111
Score = 39.9 bits (91), Expect = 0.032
Identities = 24/56 (42%), Positives = 30/56 (52%), Gaps = 5/56 (8%)
Query: 208 ATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGV 263
A A +QIF +NCASCHG+D G V PNL Y D + + I GRG +
Sbjct: 40 AAAAEQIFKQNCASCHGQDLSGGV---GPNLQKVGSKYSKD--EIKNIIANGRGAM 90
pdb|2MTA|C Chain C, Methylamine Dehydrogenase (E.C.1.4.99.3) Complex With
Amicyanin And Cytochrome C551i
Length = 147
Score = 39.9 bits (91), Expect = 0.032
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 180 DELLEPAQIDEVVQYVLQISGQPADEVKATA--GQQIFAENCASCHGEDAKGLVEMGAPN 237
D+ +E + E V++ L+ +E ++++A C+ CHG A+G + P
Sbjct: 16 DDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKI---GPG 72
Query: 238 LTDGIWLYGGDVAT--LTSTIQYGRGGVM-PSW 267
L D W Y G+ L ST+ G G M P W
Sbjct: 73 LNDAYWTYPGNETDVGLFSTLYGGATGQMGPMW 105
pir||C75521 cytochrome-related protein - Deinococcus radiodurans (strain R1)
>gi|6458109|gb|AAF10006.1|AE001902_6 (AE001902)
cytochrome-related protein [Deinococcus radiodurans]
Length = 251
Score = 39.5 bits (90), Expect = 0.041
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 20/93 (21%)
Query: 208 ATAGQQIFAENCASCHGEDAKGLVEMGAPNLTDGI-WLYGGDVATLTSTIQYGR------ 260
A AG+++FA NCA+CHG + +G V P+L + W D T+ ++ G+
Sbjct: 171 ANAGKEVFAGNCAACHGAEGQGAV---GPSLQPTVEW----DDTQFTAALREGKAPDREL 223
Query: 261 GGVMPSWSWAADGAKPRLSEAQIRAVASYVHSL 293
+MP ++ A +LS Q+ V +Y+ +L
Sbjct: 224 NTIMPRFTEA------QLSAQQVADVHAYIKTL 250
Score = 35.2 bits (79), Expect = 0.81
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 111 NAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGAIETIYTNVKHGIRDPLDPDTLL 170
NAG VF CA CHGA G G PSL +E T +R+ PD L
Sbjct: 172 NAGKEVFAGNCAACHGAEGQGAVG-PSLQP-------TVEWDDTQFTAALREGKAPDREL 223
Query: 171 VANMPAHLTDELLEPAQIDEVVQYV 195
MP T+ L Q+ +V Y+
Sbjct: 224 NTIMP-RFTEAQLSAQQVADVHAYI 247
sp|O30881|CYC6_SYNP2 CYTOCHROME C6 PRECURSOR (SOLUBLE CYTOCHROME F) (CYTOCHROME C553)
>gi|2522461|gb|AAB81077.1| (AF020306) cytochrome c6
precursor [Synechococcus PCC7002]
Length = 117
Score = 39.1 bits (89), Expect = 0.054
Identities = 30/97 (30%), Positives = 43/97 (43%), Gaps = 13/97 (13%)
Query: 200 GQPADEVKATAGQQIFAENCASCHGEDAKGLV---EMGAPNLTDGIWLYGGDVATLTSTI 256
G PA A AG Q+FA NCA+CH ++ + A L + Y +L +
Sbjct: 19 GTPAFAADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAV 78
Query: 257 QY---GRGGVMPSWSWAADGAKPRLSEAQIRAVASYV 290
Y G MP++ RLS+A I VA+Y+
Sbjct: 79 AYQVTNGQGAMPAFG-------GRLSDADIANVAAYI 108
gb|AAA33081.1| (J02774) pre-apocytochrome c552 [Chlamydomonas reinhardtii]
Length = 148
Score = 39.1 bits (89), Expect = 0.054
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 176 AHLTDELLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCH--GEDA----KG 229
A LT L A I +L A G Q+F NCA+CH G ++ K
Sbjct: 35 APLTSALAVTASI------LLTTGAASASAADLALGAQVFNGNCAACHMGGRNSVMPEKT 88
Query: 230 LVEMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVMPSWSWAADGAKPRLSEAQIRAVASY 289
L + DG G V + ++ G+ G MP+W+ RLSE +I+AVA Y
Sbjct: 89 LDKAALEQYLDG----GFKVESSIYQVENGK-GAMPAWA-------DRLSEEEIQAVAEY 136
Query: 290 V 290
V
Sbjct: 137 V 137
sp|Q09099|CYC6_MONBR CYTOCHROME C6 (CYTOCHROME C552) >gi|479935|pir||S35677 cytochrome
c6 - Monoraphidium braunii >gi|1633540|pdb|1CTJ|
Crystal Structure Of Cytochrome C6 >gi|1827816|pdb|1CED|
The Structure Of Cytochrome C6 From Monoraphidium
Braunii, Nmr, Minimized Average Structure
Length = 89
Score = 39.1 bits (89), Expect = 0.054
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 205 EVKATAGQQIFAENCASCHGEDAKGLV------EMGAPNLTDGIWLYGGDVATLTSTIQY 258
E G+ +F NCA+CH ++ + DG G ++ + I+
Sbjct: 1 EADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDG----GFNIEAIVYQIEN 56
Query: 259 GRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
G+ G MP+W DG RL E +I VA+YV+ G
Sbjct: 57 GK-GAMPAW----DG---RLDEDEIAGVAAYVYDQAAG 86
pir||S77923 cytochrome c6 - green alga (Scenedesmus obliquus)
Length = 89
Score = 38.7 bits (88), Expect = 0.071
Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 10/88 (11%)
Query: 211 GQQIFAENCASCH-GEDAKGLVEMGAPNLTDGIWLYGG-DVATLTSTIQYGRGGVMPSWS 268
G+Q F NCA+CH G + + + +L GG ++ +T ++ G+ G MP+WS
Sbjct: 7 GKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENGK-GAMPAWS 65
Query: 269 WAADGAKPRLSEAQIRAVASYVHSLGGG 296
D + +I AVA+YV+ G
Sbjct: 66 GTLD-------DDEIAAVAAYVYDQASG 86
pdb|1A2S| The Solution Nmr Structure Of Oxidized Cytochrome C6 From The
Green Alga Monoraphidium Braunii, Minimized Average
Structure
Length = 89
Score = 38.3 bits (87), Expect = 0.093
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 211 GQQIFAENCASCHGEDAKGLV------EMGAPNLTDGIWLYGGDVATLTSTIQYGRGGVM 264
G+ +F NCA+CH ++ + DG G ++ + I+ G+ G M
Sbjct: 7 GKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDG----GFNIEAIVYQIENGK-GAM 61
Query: 265 PSWSWAADGAKPRLSEAQIRAVASYVHSLGGG 296
P+W DG RL E +I VA+YV+ G
Sbjct: 62 PAW----DG---RLDEDEIAGVAAYVYDQAAG 86
gb|AAD00004.1| (U39811) CytM [Synechococcus PCC7942]
Length = 145
Score = 38.3 bits (87), Expect = 0.093
Identities = 23/59 (38%), Positives = 30/59 (49%), Gaps = 8/59 (13%)
Query: 182 LLEPAQIDEVVQYVLQISGQPADEVKATAGQQIFAENCASCHGEDAKGLVEMGAPNLTD 240
L+ PA D V VL + G A GQ IF NCA CHG + +GLV N+++
Sbjct: 56 LIRPA--DPYVSTVLNLPGN------AERGQAIFQINCAGCHGPEGRGLVGPDLANVSN 106
Database: nr
Posted date: Apr 7, 2000 10:55 PM
Number of letters in database: 154,329,450
Number of sequences in database: 492,152
Lambda K H
0.316 0.133 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99502358
Number of Sequences: 492152
Number of extensions: 4400743
Number of successful extensions: 12283
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 12036
Number of HSP's gapped (non-prelim): 178
length of query: 297
length of database: 154,329,450
effective HSP length: 52
effective length of query: 245
effective length of database: 128,737,546
effective search space: 31540698770
effective search space used: 31540698770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 70 (31.7 bits)
