Score E
Sequences producing significant alignments: (bits) Value
pir||S49347 ccoQ protein - Rhodobacter capsulatus >gi|21264... 126 2e-29
gb|AAC46110.1| (AF016223) cytochrome oxidase putative subun... 120 1e-27
gb|AAB02558.1| (U58092) cbb3-type cytochrome c oxidase CcoQ... 67 2e-11
gb|AAC43500.1| (U35445) CcoQ [Rhodobacter sphaeroides] 49 6e-06
gb|AAB58266.1| (U90521) cbb3-type cytochrome oxidase compon... 49 6e-06
emb|CAB02451.1| (Z80340) FixQc [Rhizobium leguminosarum] 48 1e-05
gb|AAC15891.1| (U76906) transmembrane protein [Rhizobium etli] 47 2e-05
pir||S39990 fixQ protein - Rhizobium meliloti >gi|49410|emb... 45 1e-04
pir||S77597 ccoQ protein - Paracoccus denitrificans >gi|100... 43 3e-04
pir||F75350 probable protein-export membrane protein - Dein... 29 5.5
gb|AAC72073.1| (AF054871) cytcbb3 cytochrome c oxidase CytQ... 29 7.2
dbj|BAA76897.1| (D88185) alpha A crystallin [Xenopus laevis] 28 9.4
pir||S49347 ccoQ protein - Rhodobacter capsulatus >gi|2126459|pir||S65860
ccoQ protein - Rhodobacter capsulatus
>gi|556815|emb|CAA56435.1| (X80134) CcoQ [Rhodobacter
capsulatus]
Length = 58
Score = 126 bits (314), Expect = 2e-29
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MDYHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPADHGRG 58
MDYHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPADHGRG
Sbjct: 1 MDYHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPADHGRG 58
gb|AAC46110.1| (AF016223) cytochrome oxidase putative subunit [Rhodobacter
capsulatus]
Length = 58
Score = 120 bits (299), Expect = 1e-27
Identities = 55/58 (94%), Positives = 57/58 (97%)
Query: 1 MDYHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPADHGRG 58
MDYHILREFADSWAALALLLTFIGAVIWAFRPGSS+VHDDIANIPFRHEDKPAD G+G
Sbjct: 1 MDYHILREFADSWAALALLLTFIGAVIWAFRPGSSRVHDDIANIPFRHEDKPADRGQG 58
gb|AAB02558.1| (U58092) cbb3-type cytochrome c oxidase CcoQ subunit [Rhodobacter
sphaeroides]
Length = 67
Score = 66.7 bits (160), Expect = 2e-11
Identities = 29/52 (55%), Positives = 36/52 (68%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPAD 54
Y +LR FADSW + + L F+G V WA+RP S K HD+ A+ FRHE KPAD
Sbjct: 4 YSLLRGFADSWMLIVMTLFFVGVVFWAWRPRSRKDHDEAASAIFRHETKPAD 55
gb|AAC43500.1| (U35445) CcoQ [Rhodobacter sphaeroides]
Length = 50
Score = 48.8 bits (114), Expect = 6e-06
Identities = 21/37 (56%), Positives = 26/37 (69%)
Query: 18 LLLTFIGAVIWAFRPGSSKVHDDIANIPFRHEDKPAD 54
+ L F+G V WA+RP S K HD+ A+ FRHE KPAD
Sbjct: 2 MTLFFVGVVFWAWRPRSRKDHDEAASAIFRHETKPAD 38
gb|AAB58266.1| (U90521) cbb3-type cytochrome oxidase component FixQ [Rhizobium
leguminosarum bv. viciae]
Length = 50
Score = 48.8 bits (114), Expect = 6e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHE 49
Y +R FADSWA LA+ F+G V++ RPGS + + A+IP + +
Sbjct: 4 YTAMRHFADSWALLAMAAFFVGVVVFTLRPGSKQTAKEAADIPLKDD 50
emb|CAB02451.1| (Z80340) FixQc [Rhizobium leguminosarum]
Length = 50
Score = 47.6 bits (111), Expect = 1e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHE 49
Y +R FADSW LA+ F+G V++ RPGS + + A+IP + +
Sbjct: 4 YTAMRHFADSWGLLAMAAFFVGVVVFTLRPGSKQTAKEAADIPLKED 50
gb|AAC15891.1| (U76906) transmembrane protein [Rhizobium etli]
Length = 50
Score = 47.3 bits (110), Expect = 2e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHE 49
Y +R F+DSW LA+ F+GAV+ RPGS + D A+IP + +
Sbjct: 4 YTAMRHFSDSWGLLAMAAFFVGAVMLTLRPGSKQTAKDAADIPLKDD 50
pir||S39990 fixQ protein - Rhizobium meliloti >gi|49410|emb|CAA79903.1|
(Z21854) FixQ [Sinorhizobium meliloti]
Length = 50
Score = 44.5 bits (103), Expect = 1e-04
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHE 49
Y +R FADSW LA+ L F+G V + FRPG+ + IP + +
Sbjct: 4 YTAMRHFADSWGLLAMTLFFLGVVFFIFRPGAKNAAAQASVIPLKED 50
pir||S77597 ccoQ protein - Paracoccus denitrificans
>gi|1002880|gb|AAC44518.1| (U34353) CcoQ [Paracoccus
denitrificans]
Length = 48
Score = 43.4 bits (100), Expect = 3e-04
Identities = 17/31 (54%), Positives = 23/31 (73%)
Query: 3 YHILREFADSWAALALLLTFIGAVIWAFRPG 33
Y LRE ADSW L L++ F+G +++AFRPG
Sbjct: 4 YSFLRELADSWVLLLLVVFFLGTIVFAFRPG 34
pir||F75350 probable protein-export membrane protein - Deinococcus
radiodurans (strain R1)
>gi|6459594|gb|AAF11371.1|AE002022_4 (AE002022)
protein-export membrane protein, putative [Deinococcus
radiodurans]
Length = 768
Score = 29.0 bits (63), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 13 WAALALLLTFIGAVIWAFRPGSSK 36
W AL LLLT +G++++ +RP K
Sbjct: 33 WTALLLLLTLLGSLLYIWRPWEHK 56
gb|AAC72073.1| (AF054871) cytcbb3 cytochrome c oxidase CytQ subunit
[Azospirillum brasilense]
Length = 53
Score = 28.6 bits (62), Expect = 7.2
Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 4/44 (9%)
Query: 6 LREFADSWAALALLLTFIGAVIWAFRPGSSKVHDDIANIPFRHE 49
LR F W AL F G V++A PG+ +D + IP + +
Sbjct: 10 LRSFWTVWLALL----FTGIVVYAMWPGNRGKFEDASRIPLKED 49
dbj|BAA76897.1| (D88185) alpha A crystallin [Xenopus laevis]
Length = 171
Score = 28.2 bits (61), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 34 SSKVHDDIANIPFRHEDKPADHG 56
S KVHDD I +H ++ DHG
Sbjct: 86 SVKVHDDFVEIHGKHNERQDDHG 108
Database: nr
Posted date: Apr 7, 2000 10:55 PM
Number of letters in database: 154,329,450
Number of sequences in database: 492,152
Lambda K H
0.326 0.142 0.468
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19350224
Number of Sequences: 492152
Number of extensions: 533258
Number of successful extensions: 1549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 12
length of query: 58
length of database: 154,329,450
effective HSP length: 37
effective length of query: 21
effective length of database: 136,119,826
effective search space: 2858516346
effective search space used: 2858516346
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 61 (28.2 bits)
