Chicken Complex II (Succinate:CoenzymeQ oxidoreductase) sequences

For more details see this.

SQR FP:
(lowercase region in 3d row is unknown fr chick- beef seq used)
xxMAAVVAASRSLAKCWLRPAARAWPAACQTHARNFHFTVDGKKNASTKVSDSISTQYPV
VDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDD
NWRWHFYDTVKGSDWLGDQDAIHYMTEQapasvvelenygmpfsrtedGKIYQRAFGGQS
LQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIAL
CIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHP
TGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGC
GPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNY
KGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCKP
GEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCE
KLSQIYCDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDY
KFRIDDFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLNEEDCSSV
PPAIRSY 667

UDELPATPK0054E6F udel.pat.pk0054.e6.f    Frame = +1
for 3-148 

From NR database: gi|3851616|gb|AAC72374.1|  (AF095939)
for 169-667

 DKFZ426_3N5R1 REFORMAT of: dkfz426_3n5r1.dat   Frame = +1
(This is all included in seq from NR database)

SQR IP:

  1 maaavvgvsl rrgvparflr aglrpvrgle avhgicrgaq taaaatsrik kfsiyrwdpd
 61 kpgdkprmqt yevdlnkcgp mvldalikik neldstltfr rscregicgs camniaggnt
121 lactkkidpd lskttkiypl phmyvvkdlv pdlsnfyaqy ksiepylkkk deskqgkeqy
181 lqsiedrqkl dglyecilca ccstscpsyw wngdkylgpa vlmqayrwmi dsrddyteer
241 laqlqdpfsl yrchtimnct rtcpkglnpg kaiaeikkmm atykekaaaa

gi|3851612|gb|AAC72372.1|   (AF095937)

UDELPATPK0036A2F udel.pat.pk0036.a2.f    Frame = +3

Chicken QPS1
  1 MAALVLRCVARRCLLARLSPGPSVHHVVPMATTAKEEMARFWEKNTKSSRPLSPHISIYKW  61
 62 SLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALV 121
122 FPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSSAAIAAM 170

UDELPATPK0079D4F    Frame = +2

UDELPATPK0076F8F    Frame = +1, Frame = +3
FM_ROS050B11-T3-1   Frame = +1

Chicken QPS3:(this aligns with 17-158(end) of beef sequence
17 AALLRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL
GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT
GLCYFNYYDVGICKAVAMLWSI

DKFZ426_16P18R1     Frame = +3
UDELPATPK0023E8F    Frame = +2
FM_ROS051C11-T3-1   Frame = +1

DKFZ426_16P18R1   AALLRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL 179
FM_ROS051C11-T3-1    LRGTLLRHSAVLTAAADRSAPA---RQSHGGAPQGHGSSKAASLHWTSERAVSALLL 273
UDELPATPK0023E8F                                                  WTSERAVSALLL

DKFZ426_16P18R1   GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT 359
FM_ROS051C11-T3-1 GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVMEILLSKWLNTGL 417
UDELPATPK0023E8F  GLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFT 181

DKFZ426_16P18R1   GLCYFNYYDVGICKAVAMLWSI 425
FM_ROS051C11-T3-1
UDELPATPK0023E8F  GLCYFNYYDVGICKAVAMLWSI 283

Sbjct: 584 RPRDRSAXARQTMVAPRRATAVPSCIPAWTXERAXSALLLGPAPRCYLXPGPLXTTPWCX 763
Sbjct: 764 LLSW--AWGLGQ 793

Sbjct: 190 LPARGAEGCAGSAHSSLLRSHHCRHRGSHPHW 95

xxx