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Bibliography- Ed Berry

Cobessi D, Huang LS, Ban M, Pon NG, Daldal F, Berry EA. Related Articles, Protein, Structure
The 2.6 A resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'.
Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):29-38.
PMID: 11752777 [PubMed - indexed for MEDLINE]
Zhang Z, Berry EA, Huang LS, Kim SH. Related Articles
Mitochondrial cytochrome bc1 complex.
Subcell Biochem. 2000;35:541-80. Review. No abstract available.
PMID: 11192733 [PubMed - indexed for MEDLINE]
Horvath A, Berry EA, Huang LS, Maslov DA. Related Articles
Leishmania tarentolae: a parallel isolation of cytochrome bc(1) and cytochrome c oxidase.
Exp Parasitol. 2000 Nov;96(3):160-7.
PMID: 11162366 [PubMed - indexed for MEDLINE]
Lee SY, Cho HS, Pelton JG, Yan D, Henderson RK, King DS, Huang L, Kustu S, Berry EA, Wemmer DE. Related Articles, Protein, Structure
Crystal structure of an activated response regulator bound to its target.
Nat Struct Biol. 2001 Jan;8(1):52-6.
PMID: 11135671 [PubMed - indexed for MEDLINE]
Berry EA, Zhang Z, Bellamy HD, Huang L. Related Articles
Crystallographic location of two Zn(2+)-binding sites in the avian cytochrome bc(1) complex.
Biochim Biophys Acta. 2000 Aug 15;1459(2-3):440-8.
PMID: 11004461 [PubMed - indexed for MEDLINE]
Berry EA, Guergova-Kuras M, Huang LS, Crofts AR. Related Articles
Structure and function of cytochrome bc complexes.
Annu Rev Biochem. 2000;69:1005-75. Review.
PMID: 10966481 [PubMed - indexed for MEDLINE]
Berry EA, Zhang Z, Huang LS, Kim SH. Related Articles
Structures of quinone-binding sites in bc complexes: functional implications.
Biochem Soc Trans. 1999 Aug;27(4):565-72. Review. No abstract available.
PMID: 10917643 [PubMed - indexed for MEDLINE]
Chi YI, Huang LS, Zhang Z, Fernandez-Velasco JG, Berry EA. Related Articles
X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.
Biochemistry. 2000 Jul 4;39(26):7689-701.
PMID: 10869174 [PubMed - indexed for MEDLINE]
McFadden DC, Tomavo S, Berry EA, Boothroyd JC. Related Articles, Nucleotide, Protein
Characterization of cytochrome b from Toxoplasma gondii and Q(o) domain mutations as a mechanism of atovaquone-resistance.
Mol Biochem Parasitol. 2000 Apr 30;108(1):1-12.
PMID: 10802314 [PubMed - indexed for MEDLINE]
Horvath A, Berry EA, Maslov DA.
Translation of the edited mRNA for cytochrome b in trypanosome mitochondria.
Science. 2000 Mar 3;287(5458):1639-40.
PMID: 10698736; UI: 20165033
Crofts AR, Hong S, Zhang Z, Berry EA.
Physicochemical aspects of the movement of the rieske iron sulfur protein during quinol oxidation by the bc(1) complex from mitochondria and photosynthetic bacteria.
Biochemistry. 1999 Nov 30;38(48):15827-39.
PMID: 10625447; UI: 20093125
Crofts AR, Barquera B, Gennis RB, Kuras R, Guergova-Kuras M, Berry EA.
Mechanism of ubiquinol oxidation by the bc(1) complex: different domains of the quinol binding pocket and their role in the mechanism and binding of inhibitors.
Biochemistry. 1999 Nov 30;38(48):15807-26.
PMID: 10625446; UI: 20093124
Crofts AR, Guergova-Kuras M, Huang L, Kuras R, Zhang Z, Berry EA.
Mechanism of ubiquinol oxidation by the bc(1) complex: role of the iron sulfur protein and its mobility.
Biochemistry. 1999 Nov 30;38(48):15791-806.
PMID: 10625445; UI: 20093123
Berry EA, Huang LS, Zhang Z, Kim SH.
Structure of the avian mitochondrial cytochrome bc1 complex.
J Bioenerg Biomembr. 1999 Jun;31(3):177-90. Review.
PMID: 10591524; UI: 20057524
Izrailev S, Crofts AR, Berry EA, Schulten K.
Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome bc(1) complex.
Biophys J. 1999 Oct;77(4):1753-68.
PMID: 10512801; UI: 99444110
Crofts AR, Hong S, Ugulava N, Barquera B, Gennis R, Guergova-Kuras M, Berry EA.
Pathways for proton release during ubihydroquinone oxidation by the bc(1) complex.
Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10021-6.
PMID: 10468555; UI: 99398655

Berry EA, Zhang Z, Huang LS, Kim SH. Related Articles
Structures of quinone-binding sites in bc complexes: functional implications.
Biochem Soc Trans. 1999 Aug;27(4):565-72. Review. No abstract available.
PMID: 10917643 [PubMed - indexed for MEDLINE]
10. Saribas, A.S., Valkova-Valchanova, M., Tokito, M.K., Zhang, Z., Berry, E.A., and Daldal ,F., (1998)
Interactions between the cytochrome b, cytochrome c1, and Fe-S protein subunits at the ubihydroquinone oxidation site of the bc1 complex of Rhodobacter capsulatus.
Biochemistry. 1998 Jun 2; 37(22): 8105-8114.
PMID: 9609705; UI: 98272685.
11. Zhang, Z., Huang, L.-S., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., and Kim, S.-H. (1998)
Electron transfer by domain movement in cytochrome bc1.
Nature. 1998 Apr 16; 392(6677): 677-684.
PMID: 9565029; UI: 98224700.
12. Berry EA; Shulmeister VM; Huang LS; Kim SH.
A new crystal form of bovine heart ubiquinol:cytochrome c oxidoreductase -
determination of space group and unit-cell parameters.
Acta Crystallographica section D-Biological Crystallography, 1995 Mar 1, V51 Mar:235-239.
13 Garcia-Horsman JA, et al.
A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA.
Biochemistry. 1994 Mar 15; 33(10): 3113-3119.
PMID: 8130226; UI: 94176507.
14.Perkins GA, et al.
Characterization of the conformational change in the M1 and M2 substates of bacteriorhodopsin by the combined use of visible and infrared spectroscopy.
J Struct Biol. 1992 Sep; 109(2): 142-151.
PMID: 1288615; UI: 93168508.
15.Berry EA, et al.
X-ray diffraction by crystals of beef heart ubiquinol: cytochrome c oxidoreductase.
J Mol Biol. 1992 Apr 20; 224(4): 1161-1166.
PMID: 1314906; UI: 92235850.
16.Berry EA, et al.
Ubiquinol-cytochrome c oxidoreductase of higher plants. Isolation and characterization of the bc1 complex from potato tuber mitochondria.
J Biol Chem. 1991 May 15; 266(14): 9064-9077.
PMID: 1851164; UI: 91225010.
17.Huang LS, et al.
Purification and characterization of the proton translocating plasma membrane ATPase of red beet storage tissue.
Biochim Biophys Acta. 1990 Jun 19; 1039(2): 241-252.
PMID: 2142002; UI: 90304197.
18.Crofts, A., Robinson, H., Andrews, K., van Doren, S., and Berry, E. (1988)
Catalytic Sites for Reduction and Oxidation of Quinones. In Cytochrome Systems,
(Papa,S. et al. eds.) Plenum Press, N.Y. pp. 617-624.
19.Berry EA, et al.
Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra.
Anal Biochem. 1987 Feb 15; 161(1): 1-15.
PMID: 3578775; UI: 87210999.
20.Berry EA, et al.
Isolation of ubiquinol oxidase from Paracoccus denitrificans.
Methods Enzymol. 1986; 126: 305-316. No abstract available.
PMID: 2856133; UI: 90173834.
21. Berry, E.A. and Trumpower, B.L. (1985)
Pathways of Electrons and Protons Through the Cytochrome bc1 complex of the Mitochondrial Respiratory Chain.
In "Coenzyme Q" (G. Lenaz, Ed.), Wiley & Sons, 365-389.
22.Berry EA, et al.
Isolation of ubiquinol oxidase from Paracoccus denitrificans and resolution into cytochrome bc1 and cytochrome c-aa3 complexes.
J Biol Chem. 1985 Feb 25; 260(4): 2458-2467.
PMID: 2982819; UI: 85130990.
23.Berry EA, et al.           [See Related Articles]
Measurement of the electrochemical proton gradient in submitochondrial particles.
J Biol Chem. 1983 Feb 10; 258(3): 1474-1486.
PMID: 6296098; UI: 83108932.