Bos.taurus           40        50        60         70                   80        90       
                      |         |         |          |                    |         |       
Bos.taurus    RKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADV-LAMSKIE-----------IKLSDIPEGKNMAFKW-RGKPL
Chicken       RKGFSYLVTATACVATAYAAKNVVTQFISSLSASADV-LALSKIE-----------IKLSDIPEGKNVAFKW-RGKPL
Sach.cere     GRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADV-LAMAKVE-----------VNLAAIPLGKNVVVKW-QGKPV
Rrubrum       RRDFLIYGTTAVGAVGVALA---VWPFIDFMNPAADT-LALASTE-----------VDVSAIAEGQAITVTW-RGKPV 
Rickettsia.p  RRDFIVLTASSVAAVGAACA---FWPIIDSFNPSADV-LALSSIE-----------VDLSNIAIGQTVTVKW-QGKPI   
Bviridis      RRDFLYVATAAVGAAGVAAV---AWPFITQMNPDAATIAAGAPID-----------IDISPVTEGQIVRVFW-RGKPI 
Rhizobiumg    RRDFLYLTTGMAGAVGAAAV---AWPFIDQMRPDAST-LALASIE-----------VNVAALQPGMSLTVKW-RGKPV 
Mesorhizobium RRDFLYVATGMAAVVGAGAV---AWPFIDQMRPDAST-LALASVE-----------VDVASLTPGMSLIVKW-RGKPV 
rbcaps        RRDFLYHATAATGVVVTGAA---VWPLINQMNASADV-KAMASIF-----------VDVSAVEVGTQLTVKW-RGKPV 
Rbsphaer      RRDFLYYATAGAGAVATGAA---VWPLINQMNPSADV-QALASIF-----------VDVSSVEPGVQLTVKF-LGKPI 
Paradeni      RRDFLYYATAGAGTVAAGAA---AWTLVNQMNPSADV-QALASIQ-----------VDVSGVETGTQLTVKW-LGKPV 
Chromatium.v  RRRVLVAATSVVGAVGAGYA---LVPFVASMNPSARARAAGAPVE-----------ADISKLEPGALLRVKW-RGMPV 
Helicobacterp RRDFLGMSLASVTAIGAIAS---LVAMKKTWDPLPSV-VSAGFTT-----------IDVANMQEGQFSTVEW-RGKPV
              ------TM-Helix-------------      helix     b1           -b1      --b2---   -b3   
Mastigo.l     RRQFMNLLAFGTVTGVALGA---LYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPT
Synecho.sp    RRQFMNLLTFGTITGVAAGA---LYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPT
Chlamy.r      KRNIMNLILAGGAGLPITTL---ALGYGAFFVPPSSGGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPT
Spinacia.o    KRETLNLLLLGALSLPTGYM---LLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPT
B.stearot     RRQFLNYTLTGVGGFMAAGM---LMPMLRFAFDPILRETAGTDMVAVADVKEITTEPKRFDFKVKVKDAWYE-SEEPR   
                       |         |            |          |                    |          |  
Rb.capsul             20        30           40         50                   60         70

    

Bos.taurus     100       110       120                          130       140                150    
                 |         |         |                            |         |                  |  
              b3--- ----helix---- turn              3/10            ---b4--        b5
Bos.taurus    FVRHRTKKEIDQEAAVEVSQLRDP------------QHDLERVK-------KPEWVILIGVCTHLGCVPIAN---------AG
Chicken       FVRHRTQAEINQEAEVDVSKLRDP------------QHDLDRVK-------KPEWVILVGVCTHLGCVPIAN---------SG
Sach.cere     FIRHRTPHEIQEANSVDMSALKDP------------QTDADRVK-------DPQWLIMLGICTHLGCVPIGE---------AG
Rrubrum       FVRHRTQKEIVVARAVDPASLRDP------------QTDEARVQ-------QAQWLVMVGVCTHLGCIPLGQKAG----DPKG 
Rickettsia.p  FITNRTHDEIAAARAVKMSELIDP------------ERDEVRVKA-----GHDNWLVTIGICTHLGCVPLSH---------KG   
Bviridis      FIRHRTAKEIQSEEAADVGALIDP------------QPDSARVKP-----GKAEWLVVYASCTHLGCIPLGH---------QG 
Rhizobiumg    FIRNRTPKELEEADAVALSDLKDPVARNANIAADAEATGLDRSAGE----GKENWIVMIGSCTHLGCVPLGQ---------AG 
Mesorhizob    VVRNRTEKEMKDGEAVNLSDLKDPIARNANLPADAPATDANRTTP-----GKEAWMVMVQVCTHLGCIPLGQ---------EG 
rbcaps        FIRRRDEKDIELARSVPLGALRDTSAENANKP-GAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGD--------KSG 
Rbsphaer      FIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDE-----AGEWLVMWGVCTHLGCVPIGG--------VSG 
Paradeni      FIRRRTEDEIQAGREVDLGQLIDRSAQNSNKP-DAPATDENRTMDE-----AGEWLVMIGVCTHLGCVPIGD--------GAG 
Chromatium.v  WVVHRS-SEMLAALSSNDPKLVDPTSEVPQQP-D-YCKNPTRSI-------KPEYLVAIGICTHLGCSPTYRPEFGPDDLGSG   
Helicobact.p  YILKRSKKEGFNEKRDFKV-------------------------------GESVFTTAIQICTHLGCIPTYQ----------D
              b3--- ----helix---- turn              3/10            ---b4--        b5
Mastigo.l     YIVVESKE-------------------------------------------AIRDYGINAVCTHLGCVVPWN---------AA
Synecho.sp    YIVVQGDD-------------------------------------------TIANYGINAVCTHLGCVVPWN---------AS
Chlamy.r      YLIVTADS-------------------------------------------TIEKYGLNAVCTHLGCVVPWV---------AA
Spinacia.o    YLVVESDK-------------------------------------------TLATFGINAVCTHLGCVVPFN---------AA
B.stearot     SAWVYKDE-------------------------------------------KGDIIALSPVCKHLGCTVDWN------TDKNN
                     |         |         |          |         |         |         |        
Rb.capsul           80        90       100        110       120       130       140     


Bos.taurus          160       170       180       190      
                      |         |         |         |                       
B.stearot     PNH-FFCPCHYGLYTKDGTNVPGTPPTAPLDRYEFEVKDGK-----LYLGKAKPRGEA-----
Mastigo.l     ENK-FKCPCHGSQYDETGRVIRG-PAPLSLALCHATVQDDN-IVLTPWTETDFRTGEKPWWV-
Synecho.sp    ENK-FMCPCHGSQYNAEGKVVRG-PAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA-
Chlamy.r      ENK-FKCPCHGSQYNAEGKVVRG-PAPLSLALAHCDVAESGLVTFSTWTETDFRTGLEPWWA-
Spinacia.o    ENK-FICPCHGSQYNNQGRVVRG-PAPLSLALAHCDVDD-GKVVFVPWTETDFRTGEAPWWSA
                --b6-    -b7-    -b8           -b9     b10
Bos.taurus    DFGGYYCPCHGSHYDASGRIRKG-PAPLNLEVPSYEFTSDDMVIVG----------------
Chicken       DFGGYYCPCHGSHYDASGRIRKG-PAPYNLEVPTYQFVGDDLVVVG----------------
Sach.cere     DFGGWFCPCHGSHYDISGRIRKG-PAPLNLEIPAYEFDGD-KVIVG----------------
Rrubrum       DFDGWFCPCHGSHYDSAGRIRKG-PAPLNLPVPPYAFTDDTTVLIG----------------  
Rickettsia.p  EYNGWFCPCHGSQYDSSGRVRKG-PAPLNLAVPPYIFISDKKIRIG----------------
Bviridis      DWGGWFCPCHGSQYDASGRVRKG-PAPTNLPVPPYEFVDNTKIRIGAGVA------------
Rhizobiumg    DFGGWFCPCHGSHYDTAGRIRKG-PAPQNLAIPTFAFASDTVIRIG---------------- 
Mesorhizob    DFGGWFCPCHGSQYDTAGRIRKG-PAPENMAVPVFKFISDTKILIG---------------- 
rbcaps        DFGGWFCPCHGSHYDSAGRIRKG-PAPRNLDIPVAAFVDETTIKLG---------------- 
Rbsphaer      DFGGWFCPCHGSHYDSAGRIRKG-PAPENLPIPLAKFIDETTIQLG---------------- 
Paradeni      DFGGWFCPCHGSHYDTSGRIRRG-PAPQNLHIPVAEFLDDTTIKLG----------------
Chromatium.v  WKGGFHCPCHGSRFDLAARVFKNVPAPTNLVIPKHVYLNDTTILIGEDRGSA----------  
Helicobact.p  EEKGFLCPCHGGRFTSDGVNIAGTPPPRPFDIPPFKIEG-TKITFGEAGAEYKKMMAKA---  
                 |         |         |         |         | 
Rb.capsul      150       160       170       180       190