NPS@ is the IBCP contribution to PBIL in Lyon, France
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Monday, February 17th 2003 : NPS@ release 3.0 is now running on a Linux cluster
HMMER (hmmbuild and hmmsearch) is now available (see news)
Job CLUSTALW (ID: 3504) is running on NPS@ server (started on Mon Aug 4 02:30:01 CEST 2003).
Results will be shown below. Please wait and don't go back.
In your publication cite :
NPS@: Network Protein Sequence Analysis
TIBS 2000 March Vol. 25, No 3 [291]:147-150
Combet C., Blanchet C., Geourjon C. and Deléage G.

CLUSTALW multiple alignment

Abstract Thompson, J.D., Higgins, D.G. and Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. (1994) Nucleic Acids Research, 22, 4673-4680 [HELP]
alignment with width :
residues.
Conservation level of % (works with "using conservation level of" option in list above).

View CLUSTALW in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP] 


                     10        20        30        40        50        60
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     ACTATCCAAAACATTTCTATTTTCCTAACACAAAAACTATAGCTAAGTTTTTATATTCTA
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   ACTATCCAAAACATTTCTATTTTCCTAACACAAAAACTATAGCTAAGTTTTTATATTCTA

                     70        80        90       100       110       120
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     TGTAGCCCCAGCCTAGGACGTAAATTCCACGAGACCAAAAGCCTTGTGATGATTCCCCGA
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   TGTAGCCCCAGCCTAGGACGTAAATTCCACGAGACCAAAAGCCTTGTGATGATTCCCCGA

                    130       140       150       160       170       180
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     GGTTGCTGACCCTCCCGGTGTGTCCCGGGCCTGCTCTGGGGGACACAGCGGCGAATACGT
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   GGTTGCTGACCCTCCCGGTGTGTCCCGGGCCTGCTCTGGGGGACACAGCGGCGAATACGT

                    190       200       210       220       230       240
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     TGAACGAGGCCCCTGTTTCACGGGGCTAAAGATCCAGTAAGGACTTCACCCAGCGAGAGG
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   TGAACGAGGCCCCTGTTTCACGGGGCTAAAGATCCAGTAAGGACTTCACCCAGCGAGAGG

                    250       260       270       280       290       300
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     CAACTACGCCGGGCTTCGATACCCAATACCTCTGCAGAAAGGTGGAGTGGCAGGAATCTC
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   CAACTACGCCGGGCTTCGATACCCAATACCTCTGCAGAAAGGTGGAGTGGCAGGAATCTC

                    310       320       330       340       350       360
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     CTGAAGCCTCCAACGTCCAGGAACGCGGAAACCCAGGGCCTCCAGTGCAGGTGTCATCCC
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   CTGAAGCCTCCAACGTCCAGGAACGCGGAAACCCAGGGCCTCCAGTGCAGGTGTCATCCC

                    370       380       390       400       410       420
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     GGAGGGCGCATGCGGAGTCCCAAGAGAGGCGCGTCCCATTGGACAATGCTGAGCGGAAGA
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   GGAGGGCGCATGCGGAGTCCCAAGAGAGGCGCGTCCCATTGGACAATGCTGAGCGGAAGA

                    430       440       450       460       470       480
                      |         |         |         |         |         |
299xxx0      -------------------------------------------------GCACGAGGCCG
31341485     -------------------------------------------------GCACGAGGCCG
21752978     GCCCAAGATAGCGGGGGGAGTTGTGACAGGCTGCTGCAGACGTACTTAGAAAAGGGGTGC
180927       ------------------------------------------------------------
12653426     ------------------------------------------------GGCACGAGGCCC
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ----------------------------------------------CGGACGCGTGGG--
12836875     ------------------------------------------------GACACACCGGGA
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   GCCCAAGATAGCGGGGGGAGTTGTGACAGGCTGCTGCAGACGTACT22G2CACGAGGCC2

                    490       500       510       520       530       540
                      |         |         |         |         |         |
299xxx0      CTGTCTGCCAC-------------------------------------------------
31341485     CTGTCTGCCAC-------------------------------------------------
21752978     ATACTGGATATTCAGGCTAGGAGAAGAACGCAAAAAGCAGTGACGTACATTATTCTCTGC
180927       ------------------------------------------------------------
12653426     ATGGAGGATATGTACCGTA-----------------------------------------
13111930     ------------------------------------------------------------
4507842      ---------AT-------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     AACTCGGTCCT-------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   ATGTCGG2CAT22A222TAGGAGAAGAACGCAAAAAGCAGTGACGTACATTATTCTCTGC

                    550       560       570       580       590       600
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     ATATATTTACTTGGGAAATTGTGCGTCTCCCTATTCTGAGTCTTGGAGGAATTGGACTGG
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   ATATATTTACTTGGGAAATTGTGCGTCTCCCTATTCTGAGTCTTGGAGGAATTGGACTGG

                    610       620       630       640       650       660
                      |         |         |         |         |         |
299xxx0      ------------------------------------------------------------
31341485     ------------------------------------------------------------
21752978     TCCAACCTTATAAAGAGAGCAGTAGAGCGCGGCAGTATAGAGAGTACCTCACGAAGGGGA
180927       ------------------------------------------------------------
12653426     ------------------------------------------------------------
13111930     ------------------------------------------------------------
4507842      ------------------------------------------------------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     ------------------------------------------------------------
26346449     ------------------------------------------------------------
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   TCCAACCTTATAAAGAGAGCAGTAGAGCGCGGCAGTATAGAGAGTACCTCACGAAGGGGA

                    670       680       690       700       710       720
                      |         |         |         |         |         |
299xxx0      --------------------------------------------------CATCTTGCTT
31341485     --------------------------------------------------CATCTTGCTT
21752978     CGTGGGAAAGTGTTAGCGGGGAACGCTGGGAAACTCCCGGCCTCCGCCACCATCTTGCTT
180927       ---------------------------------------------------ATCTTGCTT
12653426     -----------------------------------------------------TTTTCTC
13111930     -----------------------------------------------------CTTGCTT
4507842      -----------------------------------------------------CTTGCTT
26353031     --------------------------------------------------GATCTTGCTT
13097347     --------------------------------------------CGACCCCATCTTGCTT
12836875     -------------------------------------C------CGACCCCATCTTGCTT
26346449     -------------------------------------------------------TGTTT
27781305     ------------------------------------------------------------
                                                                         
Prim.cons.   CGTGGGAAAGTGTTAGCGGGGAACGCTGGGAAACTCCCGGCCTCCGACCCCATCTTGCTT

                    730       740       750       760       770       780
                      |         |         |         |         |         |
299xxx0      T----------CCTCTAAGGCGGCAGTGACCGAGGTTCAGAACAAT--CTTGAGCAATGA
31341485     T----------CCTCTAAGGCGGCAGTGACCGAGGTTCAGAACAAT--CTTGAGCAATGA
21752978     T----------CCTTTAATCCGGCAGTGACCGTGTGTCAGAACAAT--CTTGAATCATGA
180927       T----------CCTTTAATCCGGCAGTGACCGTGTGTCAGAACAAT--CTTGAATCATGA
12653426     TGATCCGTATACCTTTAATCCGGCAGTGACCGTGTGTCAGAACAAT--CTTGAATCATGA
13111930     T----------CCTTTAATCCGGCAGTGACCGTGTGTCAGAACAAT--CTTGAATCATGA
4507842      T----------CCTTTAATCCGGCAGTGACCGTGTGTCAGAACAAT--CTTGAATCATGA
26353031     TG----------CTGTC-TGCAGCGGTGACCGTGGGAAAGGGCAACTGCTAGAGCCATGA
13097347     TG----------CTGTC-TGCAGCGGTGACCGTGGGAAAGGGCAACTGCTAGAGCCATGA
12836875     TG----------CTGTC-TGCAGCGGTGACCGTGGGAAAAGGCAACTGCTAGAGCCATGA
26346449     TG----------CTGTC-TGCAGCGGTGACCGTGGGAAAGGGCAACTGCTAGAGCCATGA
27781305     ---------------GAAGGAGACAGTGA-----------------------GGCCATGA
                                    * ****                           ****
Prim.cons.   TGATCCGTATACCTTTAATGCGGCAGTGACCGTGGGTCAGAACAATTGCTTGAGCCATGA

                    790       800       810       820       830       840
                      |         |         |         |         |         |
299xxx0      AGCTGTTAACCAGAGCCGGGTCCCTCTC---GAGATTTTATTCCCTCAAAGTTGCTCCTA
31341485     AGCTGTTAACCAGAGCCGGGTCCCTCTC---GAGATTTTATTCCCTCAAAGTTGCTCCTA
21752978     AGCTACTAACCAGAGCCGGCTCTTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCCA
180927       AGCTACTAACCAGAGCCGGCTCTTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCCA
12653426     AGCTACTAACCAGAGCCGGCTCTTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCCA
13111930     AGCTACTAACCAGAGCCGGCTCTTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCCA
4507842      AGCTACTAACCAGAGCCGGCTCTTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCCA
26353031     AGCTCCTCAGCAGGGCCGGGTCCTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCGA
13097347     AGCTCCTCAGCAGGGCCGGGTCCTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCGA
12836875     AGCTCCTCAGCAGGGCCGGGTCCTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCGA
26346449     AGCTCCTCAGCAGGGCCGGGTCCTTCTC---GAGATTTTATTCCCTCAAAGTTGCCCCGA
27781305     AACTTGCTACGGGTGCCCGGTTCCTCTCTAGGAGGCTTTACTCTGCAAAAGCTGCTCCAA
             * **    *   * *** * *   ****   ***  **** **    **** *** ** *
Prim.cons.   AGCTACTAACCAGAGCCGGGTCCTTCTCTAGGAGATTTTATTCCCTCAAAGTTGCCCCCA

                    850       860       870       880       890       900
                      |         |         |         |         |         |
299xxx0      AAGTTAAAGCCACAGAAGCCCCTGCAGGAGTGCCTCCACATCCTCAGGACCTTGAGTTTA
31341485     AAGTTAAAGCCACAGAAGCCCCTGCAGGAGTGCCTCCACATCCTCAGGACCTTGAGTTTA
21752978     AAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAGTTTA
180927       AAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAGTTTA
12653426     AAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAGTTTA
13111930     AAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAGTTTA
4507842      AAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAGTTTA
26353031     AGGTTAAAACTTCAGCAGCCCCTGGAGGAGTGCCTCTGCAGCCTCAGGATCTTGAGTTTA
13097347     AGGTTAAAACTTCAGCAGCCCCTGGAGGAGTGCCTCTGCAGCCTCAGGATCTTGAGTTTA
12836875     AGGTTAAAACTTCAGCAGCCCCTGGAGGAGTGCCTCTGCAGCCTCAGGATCTTGAGTTTA
26346449     AGGTTAAAACTTCAGCAGCCCCTGGAGGAGTGCCTCTGCAGCCTCAGGATCTTGAGTTTA
27781305     A------A--T-CGGAAGCAAGTGGACGGGCACGTCTGAACCCGGAGGAGCTACAGATCA
             *      *    * *  **   ** * * *  *  *   * **  **** **  ** * *
Prim.cons.   AAGTTAAAGCCACAGCAGCCCCTGCAGGAG22CCTCCACAACCTCAGGACCTTGAGTTTA

                    910       920       930       940       950       960
                      |         |         |         |         |         |
299xxx0      CCAGGTTACCAAATGGTTTAGTGATTGCTTCTCTCGAAAACTATGCTCCTGCATCAAGAA
31341485     CCAGGTTACCAAATGGTTTAGTGATTGCTTCTCTCGAAAACTATGCTCCTGCATCAAGAA
21752978     CCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAA
180927       CCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAA
12653426     CCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAA
13111930     CCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAA
4507842      CCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAA
26353031     CCAAATTACCAAATGGTTTGGTGATTGCTTCTCTGGAAAACTATGCTCCTCTGTCAAGAA
13097347     CCAAATTACCAAATGGTTTGGTGATTGCTTCTCTGGAAAACTATGCTCCTCTGTCAAGAA
12836875     CCAAATTACCAAATGGTTTGGTGATTGCTTCTCTGGAAAACTATGCTCCTCTGTCAAGAA
26346449     CCAAATTACCAAATGGTTTGGTGATTGCTTCTCTGGAAAACTATGCTCCTCTGTCAAGAA
27781305     CAAAGTTACCGAGTGGACTGGTGATTGCATCTATAGAAAATTACTCGCCCTCATCCAAGA
             * *  ***** * ***  * ******** *** * ***** **  * **    ** *  *
Prim.cons.   CCAAGTTACCAAATGGTTTGGTGATTGCTTCTCTGGAAAACTAT2CTCCTGTATCAAGAA

                    970       980       990      1000      1010      1020
                      |         |         |         |         |         |
299xxx0      TTGGTTTGTTCATTAAAGCAGGCAGCAGATATGAGAACTCCAACAATTTAGGAACTTCTC
31341485     TTGGTTTGTTCATTAAAGCAGGCAGCAGATATGAGAACTCCAACAATTTAGGAACTTCTC
21752978     TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCC
180927       TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCC
12653426     TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCC
13111930     TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCC
4507842      TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCC
26353031     TCGGCTTGTTCGTTAAAGCAGGCAGTAGATATGAGGACTCCAACAACTTGGGAACCTCAC
13097347     TCGGCTTGTTCGTTAAAGCAGGCAGTAGATATGAGGACTCCAACAACTTGGGAACCTCAC
12836875     TCGGCTTGTTCGTTAAAGCAGGCAGTAGATATGAGGACTCCAACAACTTGGGAACCTCAC
26346449     TCGGCTTGTTCGTTAAAGCAGGCAGTAGATATGAGGACTCCAACAACTTGGGAACCTCAC
27781305     TCGGTGTGTTTGTAAGAGCCGGAAGTAGATATGAAAACGCTGGTAATCTAGGGGTTAACC
             * **  ****  * * *** ** ** ********  **      **  * **       *
Prim.cons.   TTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTCCA2CAATTTAGGAACC2CCC

                   1030      1040      1050      1060      1070      1080
                      |         |         |         |         |         |
299xxx0      ATTTGCTTCGTCTTGCATCCAGTTTGACTACAAAAGGAGCTTCATCTTTCAAGATAACCC
31341485     ATTTGCTTCGTCTTGCATCCAGTTTGACTACAAAAGGAGCTTCATCTTTCAAGATAACCC
21752978     ATTTGCTGCGTCTTACATCCAGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCC
180927       ATTTGCTGCGTCTTACATCCAGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCC
12653426     ATTTGCTGCGTCTTACATCCAGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCC
13111930     ATTTGCTGCGTCTTACATCCAGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCC
4507842      ATTTGCTGCGTCTTACATCCAGTCTGACGACAAAAGGAGCTTCATCTTTCAAGATAACCC
26353031     ATTTACTACGTCTTGCATCTAGTTTGACTACCAAAGGAGCTTCATCTTTCAAGATAACCC
13097347     ATTTACTACGTCTTGCATCTAGTTTGACTACCAAAGGAGCTTCATCTTTCAAGATAACCC
12836875     ATTTACTACGTCTTGCATCTAGTTTGACTACCAAAGGAGCTTCATCTTTCAAGATAACCC
26346449     ATTTACTACGTCTTGCATCTAGTTTGACTACCAAAGGAGCTTCATCTTTCAAGATAACCC
27781305     ACGTGCTCCGTCTTGCATCCAGCTTGACAACCAAGGGTGCGTCATCATTTAAAATAACCC
             *  * ** ****** **** **  **** ** ** ** ** ***** ** ** *******
Prim.cons.   ATTTGCTGCGTCTTGCATCCAGTTTGACTACAAAAGGAGCTTCATCTTTCAAGATAACCC

                   1090      1100      1110      1120      1130      1140
                      |         |         |         |         |         |
299xxx0      GTGGAATTGAAGCAGTTGGTGGTAAATTAAGCGTGACGTCAACAAGGGAAAACATGGCCT
31341485     GTGGAATTGAAGCAGTTGGTGGTAAATTAAGCGTGACGTCAACAAGGGAAAACATGGCCT
21752978     GTGGAATTGAAGCAGTTGGTGGCAAATTAAGTGTGACCGCAACAAGGGAAAACATGGCTT
180927       GTGGAATTGAAGCAGTTGGTGGCAAATTAAGTGTGACCGCAACAAGGGAAAACATGGCTT
12653426     GTGGAATTGAAGCAGTTGGTGGCAAATTAAGTGTGACCGCAACAAGGGAAAACATGGCTT
13111930     GTGGAATTGAAGCAGTTGGTGGCAAATTAAGTGTGACCGCAACAAGGGAAAACATGGCTT
4507842      GTGGAATTGAAGCAGTTGGTGGCAAATTAAGTGTGACCGCAACAAGGGAAAACATGGCTT
26353031     GTGGGATTGAAGCAGTTGGTGGTAAATTAAGTGTGACTGCAACAAGGGAAAACATGGCGT
13097347     GTGGGATTGAAGCAGTTGGTGGTAAATTAAGTGTGACTGCAACAAGGGAAAACATGGCGT
12836875     GTGGGATTGAAGCAGTTGGTGGTAAATTAAGTGTGACTGCAACAAGGGAAAACATGGCGT
26346449     GTGGGATTGAAGCAGTTGGTGGTAAATTAAGTGTGACTGCAACAAGGGAAAACATGGCGT
27781305     GTGGAATTGAAGCTGTCGGTGGTGGATTAAGTGTGACCTCCACAAGGGAAAATATTGTGT
             **** ******** ** *****   ****** *****  * *********** ** *  *
Prim.cons.   GTGGAATTGAAGCAGTTGGTGGTAAATTAAGTGTGACCGCAACAAGGGAAAACATGGC2T

                   1150      1160      1170      1180      1190      1200
                      |         |         |         |         |         |
299xxx0      ATACTGTGGAATGCCTGCGGGATGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
31341485     ATACTGTGGAATGCCTGCGGGATGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
21752978     ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
180927       ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
12653426     ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
13111930     ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
4507842      ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA
26353031     ACACTGTAGAAGGCATTCGGAGTGATATTGAGATCCTCATGGAGTTCCTGCTCAATGTCA
13097347     ACACTGTAGAAGGCATTCGGAGTGATATTGAGATCCTCATGGAGTTCCTGCTCAATGTCA
12836875     ACACTGTAGAAGGCATTCGGAGTGATATTGAGATCCTCATGGAGTTCCTGCTCAATGTCA
26346449     ACACTGTAGAAGGCATTCGGAGTGATATTGAGATCCTCATGGAGTTCCTGCTCAATGTCA
27781305     ATTCAGTAGAATGTCTGCGGGATTATGTAGACACTGTAATGGAATACCTCATCAATGTTA
             *  * ** *** *  * ***  * ** * ** *   * ***** * ***  ******* *
Prim.cons.   ATACTGTGGAATGCCTGCGGGGTGATGTTGATATTCTAATGGAGTTCCTGCTCAATGTCA

                   1210      1220      1230      1240      1250      1260
                      |         |         |         |         |         |
299xxx0      CCACAGCACCAGAATTTCGACGCTGGGAGGTAGCTGCCCTTCAGCCTCAGCTAAGGATTG
31341485     CCACAGCACCAGAATTTCGACGCTGGGAGGTAGCTGCCCTTCAGCCTCAGCTAAGGATTG
21752978     CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTGACCTTCAGCCTCAGCTAAAGATTG
180927       CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTGACCTTCAGCCTCAGCTAAAGATTG
12653426     CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTGACCTTCAGCCTCAGCTAAAGATTG
13111930     CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTGACCTTCAGCCTCAGCTAAAGATTG
4507842      CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTGACCTTCAGCCTCAGCTAAAGATTG
26353031     CCACAGCACCCGAGTTTCGCCGTTGGGAAGTAGCTGCCCTGCGGTCTCAGCTAAAGATTG
13097347     CCACAGCACCCGAGTTTCGCCGTTGGGAAGTAGCTGCCCTGCGGTCTCAGCTAAAGATTG
12836875     CCACAGCACCCGAGTTTCGCCGTTGGGAAGTAGCTGCCCTGCGGTCTCAGCTAAAGATTG
26346449     CCACAGCACCCGAGTTTCGCCGTTGGGAAGTAGCTGCCCTGCGGTCTCAGCTAAAGATTG
27781305     CCACTGCTCCAGAATTCAGGAGATGGGAGGTATCTGATCTACAATCAAAAGTAAAACTTG
             **** ** ** ** **  *  * ***** *** ***  ** *   *  *  ***   ***
Prim.cons.   CCACAGCACCAGAATTTCGTCGTTGGGAAGTAGCTG2CCTTCAGCCTCAGCTAAAGATTG

                   1270      1280      1290      1300      1310      1320
                      |         |         |         |         |         |
299xxx0      ACAAAGCTGTGGCTCTTCAGAATCCACAGGCTCACGTCATTGAAAATTTGCATGCTGCCG
31341485     ACAAAGCTGTGGCTCTTCAGAATCCACAGGCTCACGTCATTGAAAATTTGCATGCTGCCG
21752978     ACAAAGCTGTGGCCTTTCAGAATCCGCAGACTCATGTCATTGAAAATTTGCATGCAGCAG
180927       ACAAAGCTGTGGCCTTTCAGAATCCGCAGACTCATGTCATTGAAAATTTGCATGCAGCAG
12653426     ACAAAGCTGTGGCCTTTCAGAATCCGCAGACTCATGTCATTGAAAATTTGCATGCAGCAG
13111930     ACAAAGCTGTGGCCTTTCAGAATCCGCAGACTCATGTCATTGAAAATTTGCATGCAGCAG
4507842      ACAAAGCTGTGGCCTTTCAGAATCCGCAGACTCATGTCATTGAAAATTTGCATGCAGCAG
26353031     ACAAAGCTGTTGCCTTTCAGAATTCACAGACCCGTATCATTGAGAACTTGCATGATGTTG
13097347     ACAAAGCTGTTGCCTTTCAGAATTCACAGACCCGTATCATTGAGAACTTGCATGATGTTG
12836875     ACAAAGCTGTTGCCTTTCAGAATTCACAGACCCGTATCATTGAGAACTTGCATGATGTTG
26346449     ACAAAGCTGTTGCCTTTCAGAATTCACAGACCCGTATCATTGAGAACTTGCATGATGTTG
27781305     ATAAGGCCATTGCCTATCAAAACCCACAAGTTGGAGTTCTAGAAAATCTTCATGCAGCTG
             * ** **  * **   *** **  * **        *  * ** **  * ****  *  *
Prim.cons.   ACAAAGCTGTGGCCTTTCAGAATCCACAGACTCATGTCATTGAAAATTTGCATGC2GC2G

                   1330      1340      1350      1360      1370      1380
                      |         |         |         |         |         |
299xxx0      CTTACAGAAATGCCTTGGCTAATTCCTTATATTGTCCTGATTATAGGATTGGAAAAGTGA
31341485     CTTACAGAAATGCCTTGGCTAATTCCTTATATTGTCCTGATTATAGGATTGGAAAAGTGA
21752978     CTTACCGGAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA
180927       CTTACCAGAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA
12653426     CTTACCGGAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA
13111930     CTTACCGGAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA
4507842      CTTACCAGAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA
26353031     CCTACAAGAATGCCTTGGCTAATCCTTTGTACTGTCCTGACTATAGGATGGGGAAGATAA
13097347     CCTACAAGAATGCCTTGGCTAATCCTTTGTACTGTCCTGACTATAGGATGGGGAAGATAA
12836875     CCTACAAGAATGCCTTGGCTAATCCTTTGTACTGTCCTGACTATAGGATGGGGAAGATAA
26346449     CCTACAAGAATGCCTTGGCTAATCCTTTGTACTGTCCTGACTATAGGATGGGGAAGATAA
27781305     CTTACAGAAATACACTGGCTAACTCCTTGTACTGTCCTGACTACAGGATTGGAAAAATTA
             * ***   *** *  *******  * ** ** ******** ** ***** ** **  * *
Prim.cons.   CTTACA2GAATGCCTTGGCTAATCCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGA

                   1390      1400      1410      1420      1430      1440
                      |         |         |         |         |         |
299xxx0      CACCAGTTGAGTTACATGACTATGTACAAAATCATTTTACAAGTGCAAGAATGGCTTTGA
31341485     CACCAGTTGAGTTACATGACTATGTACAAAATCATTTTACAAGTGCAAGAATGGCTTTGA
21752978     CATCAGAGGAGTTACATTACTTCGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA
180927       CATCAGAGGAGTTACATTACTTCGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA
12653426     CATCAGAGGAGTTACATTACTTCGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA
13111930     CATCAGAGGAGTTACATTACTTCGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA
4507842      CATCAG----------TTACTTCGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA
26353031     CATCAGAGGAATTACATTACTTTGTTCAGAACCACTTCACAAGTGCAAGAATGGCTCTGG
13097347     CATCAGAGGAATTACATTACTTTGTTCAGAACCACTTCACAAGTGCAAGAATGGCTCTGG
12836875     CATCAGAGGAATTACATTACTTTGTTCAGAACCACTTCACAAGTGCAAGAATGGCTCTGG
26346449     CATCAGAGGAATTACATTACTTTGTTCAGAACCACTTCACAAGTGCAAGAATGGCTCTGG
27781305     CATCAGATGAGTTGCAGCAGTTTGTACAGAACCATTTTACAAGCTCAAGGATGGCACTGG
             ** ***            * *  ** ** ** ** ** *****  **** *****  ** 
Prim.cons.   CATCAGAGGAGTTACATTACTTTGTTCAGAACCATTTCACAAGTGCAAGAATGGCTTTGA

                   1450      1460      1470      1480      1490      1500
                      |         |         |         |         |         |
299xxx0      TTGGACTTGGTGTGAGTCATCCTGTCCTAAAGCAAGTTGCTGAACAGTTTCTTAACATAA
31341485     TTGGACTTGGTGTGAGTCATCCTGTCCTAAAGCAAGTTGCTGAACAGTTTCTTAACATAA
21752978     TTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA
180927       TTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA
12653426     TTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA
13111930     TTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA
4507842      TTGGACTTGGTGTGAGTCATCCTGTTCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA
26353031     TTGGACTTGGTGTGAGTCATTCTGTCTTAAAGCAGGTGGCTGAACAATTTCTCAACATGA
13097347     TTGGACTTGGTGTGAGTCATTCTGTCTTAAAGCAGGTGGCTGAACAATTTCTCAACATGA
12836875     TTGGACTTGGTGTGAGTCATTCTGTCTTAAAGCAGGTGGCTGAACAATTTCTCAACATGA
26346449     TTGGACTTGGTGTGAGTCATTCTGTCTTAAAGCAGGTGGCTGAACAATTTCTCAACATGA
27781305     TTGGATTAGGCGTGAGCCACTCTGAGCTTAGACAAGTGGGCGAGCAGTTCCTGAACATAA
             ***** * ** ***** **  ***   * *  ** ** *  ** ** ** ** ***** *
Prim.cons.   TTGGACTTGGTGTGAGTCATCCTGTCCTAAAGCAAGTTGCTGAACAGTTTCTCAACATGA

                   1510      1520      1530      1540      1550      1560
                      |         |         |         |         |         |
299xxx0      GGGGTGGCCTTGGTTTATCTGGTGCAAAAGCCAAGTACCATGGAGGTGAAATTCGAGAAC
31341485     GGGGTGGCCTTGGTTTATCTGGTGCAAAAGCCAAGTACCATGGAGGTGAAATTCGAGAAC
21752978     GGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACCGTGGAGGTGAAATCCGAGAAC
180927       GGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACCGTGGAGGTGAAATCCGAGAAC
12653426     GGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACCGTGGAGGTGAAATCCGAGAAC
13111930     GGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACCGTGGAGGTGAAATCCGAGAAC
4507842      GGGGTGGGCTTGGTTTATCTGGTGCAAAGGCCAACTACCGTGGAGGTGAAATCCGAGAAC
26353031     GGGGTGGCCTTGGTTTAGCTGGTGCAAAAGCCAAATACCGTGGAGGTGAAATTAGAGAGC
13097347     GGGGTGGCCTTGGTTTAGCTGGTGCAAAAGCCAAATACCGTGGAGGTGAAATTAGAGAGC
12836875     GGGGTGGCCTTGGTTTAGCTGGTGCAAAAGCCAAATACCGTGGAGGTGAAATTAGAGAGC
26346449     GGGGTGGCCTTGGTTTAGCTGGTGCAAAAGCCAAATACCGTGGAGGTGAAATTAGAGAGC
27781305     GGAGCGGATCAGGTTCTGCCGGTGTGAAAGCACAGTATTATGGAGCTGAAATCCGAGAAC
             ** * **    ****   * ****  ** **  * **   ***** ******  **** *
Prim.cons.   GGGGTGGCCTTGGTTTATCTGGTGCAAAAGCCAACTACCGTGGAGGTGAAAT2CGAGAAC

                   1570      1580      1590      1600      1610      1620
                      |         |         |         |         |         |
299xxx0      AGAATGGAGACAGTCTCGTCCATGCCGCTCTTGTAGCAGAGAGTGCAGCCATAGGAAGTG
31341485     AGAATGGAGACAGTCTCGTCCATGCCGCTCTTGTAGCAGAGAGTGCAGCCATAGGAAGTG
21752978     AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGTCGCGGGAAGTG
180927       AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGTCGCGGGAAGTG
12653426     AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGTCGCGGGAAGTG
13111930     AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGTCGCGGGAAGTG
4507842      AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGTCGCGGGAAGTG
26353031     AGAATGGAGACAACCTGGTCCATGCTGCTATTGTTGCAGAAAGTGCTGCCATTGGAAATG
13097347     AGAATGGAGACAACCTGGTCCATGCTGCTATTGTTGCAGAAAGTGCTGCCATTGGAAATG
12836875     AGAATGGAGACAACCTGGTCCATGCTGCTATTGTTGCAGAAAGTGCTGCCATTGGAAATG
26346449     AGAATGGAGACAACCTGGTCCATGCTGCTATTGTTGCAGAAAGTGCTGCCATTGGAAATG
27781305     ATAATGGAGACAGCCTTGTTCACGCTGCTGTTGTTGCCGAAGGAGCATCTACAGGTAGTC
             * **********  ** ** ** ** *** **** ** **  * **       ** * * 
Prim.cons.   AGAATGGAGACAGTCTTGTCCATGCTGCTTTTGTAGCAGAAAGTGCTGCCA2GGGAAGTG

                   1630      1640      1650      1660      1670      1680
                      |         |         |         |         |         |
299xxx0      CAGAAGCAAACGCGTTCAGTGTTCTCCAGCACGTCCTTGGTGCTGGACCACACGTTAAGA
31341485     CAGAAGCAAACGCGTTCAGTGTTCTCCAGCACGTCCTTGGTGCTGGACCACACGTTAAGA
21752978     CAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTCAAGA
180927       CAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTCAAGA
12653426     CAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTCAAGA
13111930     CAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTCAAGA
4507842      CAGAGGCAAATGCATTTAGTGTTCTTCAGCATGTCCTCGGTGCTGGGCCACATGTCAAGA
26353031     CAGAGGCAAATGCATTCAGTGTACTTCAGCATCTTCTTGGTGCTGGACCACATATCAAAA
13097347     CAGAGGCAAATGCATTCAGTGTACTTCAGCATCTTCTTGGTGCTGGACCACATATCAAAA
12836875     CAGAGGCAAATGCATTCAGTGTACTTCAGCATCTTCTTGGTGCTGGACCACATATCAAAA
26346449     CAGAGGCAAATGCATTCAGTGTACTTCAGCATCTTCTTGGTGCTGGACCACATATCAAAA
27781305     GTGAAGCAAATGCATTCAGTGTGCTTCAGCACATTCTAGGAGCTGGGCCCTTCATCAAAA
               ** ***** ** ** ***** ** *****  * ** ** ***** **     * ** *
Prim.cons.   CAGAGGCAAATGCATTCAGTGTTCTTCAGCATGTCCTTGGTGCTGG2CCACATGTCAAGA

                   1690      1700      1710      1720      1730      1740
                      |         |         |         |         |         |
299xxx0      GGGGCAGCAATGCCACCAGCTCTCTGTACCAGGCTGTTGCCAAAGT---TCACCAACCAT
31341485     GGGGCAGCAATGCCACCAGCTCTCTGTACCAGGCTGTTGCCAAAGT---TCACCAACCAT
21752978     GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAGGCAACTCAGCAGCCAT
180927       GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAGGCAACTCAGCAGCCAT
12653426     GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAGGCAACTCAGCAGCCAT
13111930     GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAGGCAACTCAGCAGCCAT
4507842      GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAGGCAACTCAGCAGCCAT
26353031     GGGGCAACAACACCACCAGCCTCCTGAGCCAGAGTGTTGCCAAAGGAAGTCACCAGCCTT
13097347     GGGGCAACAACACCACCAGCCTCCTGAGCCAGAGTGTTGCCAAAGGAAGTCACCAGCCTT
12836875     GGGGCAACAACACCACCAGCCTCCTGAGCCAGAGTGTTGCCAAAGGAAGTCACCAGCCTT
26346449     GGGGCAACAACACCACCAGCCTCCTGAGCCAGAGTGTTGCCAAAGGAAGTCACCGGCCTT
27781305     GAGGAAACAATACGAGCAGCAAACTGTCTCAGGCTGTGAACAAAGCAACCAATCAGCCAT
             * ** * ***  * * ****   ***   ***  ***   *** *      * *  ** *
Prim.cons.   GGGGCAGCAACACCACCAGCCATCTGCACCAGGCTGTTGCCAAAGCAACTCACCAGCCAT

                   1750      1760      1770      1780      1790      1800
                      |         |         |         |         |         |
299xxx0      TTGATGTTTCTGCTTTTAATGCCAGTTACTCAGACTCTGGACTCTTTGGGTTCTACACTA
31341485     TTGATGTTTCTGCTTTTAATGCCAGTTACTCAGACTCTGGACTCTTTGGGTTCTACACTA
21752978     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTA
180927       TTGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTA
12653426     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTA
13111930     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTA
4507842      TTGATGTTTCTGCATTTAATGCCAGTTACTCAGATTCTGGACTCTTTGGGATTTATACTA
26353031     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGACTCTGGGCTCTTTGGAATTTACACTA
13097347     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGACTCTGGGCTCTTTGGAATTTACACTA
12836875     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGACTCTGGGCTCTTTGGAATTTACACTA
26346449     TTGATGTTTCTGCATTTAATGCCAGTTACTCAGACTCTGGGCTCTTTGGAATTTACACTA
27781305     TTGATGTCTCTGCTTTCAATGCCAGCTACTCGGATTCTGGACTGTTTGGTGTGTATACTG
             ******* ***** ** ******** ***** ** ***** ** *****  * ** *** 
Prim.cons.   TTGATGTTTCTGCATTTAATGCCAGTTACTCAGA2TCTGGACTCTTTGGGATTTA2ACTA

                   1810      1820      1830      1840      1850      1860
                      |         |         |         |         |         |
299xxx0      TCTCACAAGCTGCATCTGCTGGAGACGTTATCAAGGCTGCTTATAACCAAGTAAAAACAA
31341485     TCTCACAAGCTGCATCTGCTGGAGACGTTATCAAGGCTGCTTATAACCAAGTAAAAACAA
21752978     TCTCCCAGGCCACAGCTGCTGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAACAA
180927       TCTCCCAGGCCACAGCTGCTGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAAGAA
12653426     TCTCCCAGGCCACAGCTGCTGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAACAA
13111930     TCTCCCAGGCCACAGCTGCTGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAACAA
4507842      TCTCCCAGGCCACAGCTGCTGGAGATGTTATCAAGGCTGCCTATAATCAAGTAAAAAGAA
26353031     TTTCCCAGGCTGCAGCTGCTGGAGAGGTTATCAATGCTGCCTACAACCAAGTCAAAGCAG
13097347     TTTCCCAGGCTGCAGCTGCTGGAGAGGTTATCAATGCTGCCTACAACCAAGTCAAAGCAG
12836875     TTTCCCAGGCTGCAGCTGCTGGAGAGGTTATCAATGCTGCCTACAACCAAGTCAAAGCAG
26346449     TTTCCCAGGCTGCAGCTGCTGGAGAGGTTATCAATGCTGCCTACAACCAAGTCAAAGCAG
27781305     TCTCTCAGGCAGCAGCAGCAAGTGAGGTTATCAATGCTGCTCTTAACCAAGTGAAGGCGG
             * ** ** **  ** * **  * ** ******** *****    ** ***** **     
Prim.cons.   TCTCCCAGGCTGCAGCTGCTGGAGA2GTTATCAAGGCTGCCTATAACCAAGTAAAAACAA

                   1870      1880      1890      1900      1910      1920
                      |         |         |         |         |         |
299xxx0      TTGCTCAAGGAAACCTTTCTAATCCAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
31341485     TTGCTCAAGGAAACCTTTCTAATCCAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
21752978     TAGCTCAAGGAAACCTTTCCAACACAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
180927       TAGCTCAAGGAAACCTTTCCAACACAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
12653426     TAGCTCAAGGAAACCTTTCCAACACAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
13111930     TAGCTCAAGGAAACCTTTCCAACACAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
4507842      TAGCTCAAGGAAACCTTTCCAACACAGATGT--CCAAGCTGCCAAGAACAAGCTGAAAGC
26353031     TTGCTCAAGGAAACCTTTCCAGTGCAGATGT--CCAAGCTGCCAAGAACAAGCTAAAAGC
13097347     TTGCTCAAGGAAACCTTTCCAGTGCAGATGT--CCAAGCTGCCAAGAACAAGCTAAAAGC
12836875     TTGCTCAAGGAAACCTTTCCAGTGCAGATGT--CCAAGCTGCCAAGAACAAGCTAAAAGC
26346449     TTGCTCAAGGAAACCTTTCCAGTGCAGATGT--CCAAGCTGCCAAGAACAAGCTAAAAGC
27781305     TGGCTCAGGGGAATGTCACAGAAGCTGATGTTACTAGG--GCAAAGAACCAGCTGAAATC
             * ***** ** **  *  *     * *****  * * *  ** ****** **** *** *
Prim.cons.   TTGCTCAAGGAAACCTTTCCAAT2CAGATGTTACCAAGCTGCCAAGAACAAGCTGAAAGC

                   1930      1940      1950      1960      1970      1980
                      |         |         |         |         |         |
299xxx0      TGGGTACCTGATGTCAGTGGAGTCTTCTGAGGGTTTCCTGGATGAAGTTGGGTCCCAGGC
31341485     TGGGTACCTGATGTCAGTGGAGTCTTCTGAGGGTTTCCTGGATGAAGTTGGGTCCCAGGC
21752978     TGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGC
180927       TGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGC
12653426     TGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGC
13111930     TGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGC
4507842      TGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGC
26353031     TGGATATCTAATGTCTGTGGAGACGTCAGAGGGCTTCCTGAGTGAAATTGGGTCACAGGC
13097347     TGGATATCTAATGTCTGTGGAGACGTCAGAGGGCTTCCTGAGTGAAATTGGGTCACAGGC
12836875     TGGATATCTAATGTCTGTGGAGACGTCAGAGGGCTTCCTGAGTGAAATTGGGTCACAGGC
26346449     TGGATATCTAATGTCTGTGGAGACGTCAGAGGGCTTCCTGAGTGAAATTGGGTCACAGGC
27781305     CCAGTACCTGATGCCTCTGGAGAGTTCCTGTGGTCTGATAGGTGACATTGGCTCCCAGGC
                 ** ** *** *  *****   **     *  *  *    **  * ** ** *****
Prim.cons.   TGGATACCTAATGTCAGTGGAGTCTTCTGAGGGTTTCCTGGATGAAGTTGGGTCCCAGGC

                   1990      2000      2010      2020      2030      2040
                      |         |         |         |         |         |
299xxx0      TCTAGCTGCTGGTTCATACACGCCGCCATCCACAGTCCTTCAGCAGATTGATGCAGTAGC
31341485     TCTAGCTGCTGGTTCATACACGCCGCCATCCACAGTCCTTCAGCAGATTGATGCAGTAGC
21752978     TCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC
180927       TCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC
12653426     TCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC
13111930     TCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC
4507842      TCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC
26353031     TCTAGCTGCAGGTTCTTATATGCCACCTTCTACCGTCCTTCAACAGATTGACTCCGTGGC
13097347     TCTAGCTGCAGGTTCTTATATGCCACCTTCTACCGTCCTTCAACAGATTGACTCCGTGGC
12836875     TCTAGCTGCAGGTTCTTATATGCCACCTTCTACCGTCCTTCAACAGATTGACTCCGTGGC
26346449     TCTAGCTGCAGGTTCTTATATGCCACCTTCTACCGTCCTTCAACAGATTGACTCCGTGGC
27781305     ATTGGCATCTGGAACATATACAACCCCAACTGAAACCATCCAGCAGATTGATTCTGTGAC
               * *   * **  * ** *   * **  *      * * ** ********  * **  *
Prim.cons.   TCTAGCTGCTGGTTCTTACATGCCACCATCCACAGTCCTTCAGCAGATTGATTCAGTGGC

                   2050      2060      2070      2080      2090      2100
                      |         |         |         |         |         |
299xxx0      TGACGCTGATGTCATAAATGCTGCAAAGAAGTTTGTTTCTGGCCGGAAGTCAATGGCAGC
31341485     TGACGCTGATGTCATAAATGCTGCAAAGAAGTTTGTTTCTGGCCGGAAGTCAATGGCAGC
21752978     TAATGCTGATATCATAAATGCGGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC
180927       TAATGCTGATATCATAAATGCGGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC
12653426     TAATGCTGATATCATAAATGCGGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC
13111930     TAATGCTGATATCATAAATGCGGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC
4507842      TAATGCTGATATCATAAATGCGGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC
26353031     TGATGCTGATGTTGTAAAGGCTGCAAAAAAGTTTGTTTCTGGCAAGAAGTCAATGGCAGC
13097347     TGATGCTGATGTTGTAAAGGCTGCAAAAAAGTTTGTTTCTGGCAAGAAGTCAATGGCAGC
12836875     TGATGCTGATGTTGTAAAGGCTGCAAAAAAGTTTGTTTCTGGCAAGAAGTCAATGGCAGC
26346449     TGATGCTGATGTTGTAAAGGCTGCAAAAAAGTTTGTTTCTGGCAAGAAGTCAATGGCAGC
27781305     CAGCGCGGATGTTGTCAGTGCTGCAAAGAAGTTTGCTTCTGGAAAGAAATCTATGGCAGC
                 ** *** *  * *  ** ***** ******* ******   *** ** ********
Prim.cons.   T2ATGCTGATGTCATAAATGCTGCAAAGAAGTTTGTTTCTGGCCAGAAGTCAATGGCAGC

                   2110      2120      2130      2140      2150      2160
                      |         |         |         |         |         |
299xxx0      AAGTGGAAATTTGGGGCATACACCTTTCATTGATGAGTTGTAATACTGAATCCCAT----
31341485     AAGTGGAAATTTGGGGCATACACCTTTCATTGATGAGTTGTAATACTGAATCCCAT----
21752978     AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACAC----
180927       AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACAC----
12653426     AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACAC----
13111930     AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACAC----
4507842      AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACAC----
26353031     GAGTGGAAACTTGGGACATACGCCTTTTCTCGACGAGTTATAACAC--ATGCGTGT----
13097347     GAGTGGAAACTTGGGACATACGCCTTTTCTCGACGAGTTATAACAC--ATGCGTGT----
12836875     GAGTGGAAACTTGGGACATACGCCTTTTCTCGACGAGTTATAACAC--ATGCGTGT----
26346449     GAGTGGAAACTTGGGACATACGCCTTTTCTCGACGAGTTATAACAC--ATGCGTGT----
27781305     TACTGGAAATTTGGAGAATACTCCTTTTGTTTCTGACCTGTGATTATGATTTATGCTGCC
              * ****** ****   **** *****  *    **  * * *     *           
Prim.cons.   AAGTGGAAATTTGGGACATACACCTTTTGTTGATGAGTTGTAATACTGATGCACA2TGCC

                   2170      2180      2190      2200      2210      2220
                      |         |         |         |         |         |
299xxx0      -ATTGCAGG---AAAGAACTGAACGTTTTGTGAACCCA--GAGCAGCAAATAACA--TGA
31341485     -ATTGCAGG---AAAGAACTGAACGTTTTGTGAACCCA--GAGCAGCAAATAACA--TGA
21752978     -ATTACAGG---AGAGAGCTGAACGTTCTCTCAGCCCA--GAGCAGCAAACA-CA--TGA
180927       -ATTACAGG---AGAGAGCTGAACGTTCTCTCA-CCCA--GAGCAGCAAACA-CA--TGA
12653426     -ATTACAGG---AGAGAGCTGAACGTTCTCTCAGCCCA--GAGCAGCAAACA-CA--TGA
13111930     -ATTACAGG---AGAGAGCTGAACGTTCTCTCAGCCCA--GAGCAGCAAACA-CA--TGA
4507842      -ATTACAGG---AGAGAGCTGAACGTTCTCTCA-CCCA--GAGCAGCAAACA-CA--TGA
26353031     -ATTT-------AAAG-------------CTCAGCCCA--GACCAGCAAGCA-CA--TCA
13097347     -ATTT-------AAAG-------------CTCAGCCCA--GACCAGCAAGCA-CA--TCA
12836875     -ATTT-------AAAG-------------CTCAGCCCA--GACCAGCAAGCA-CA--TCA
26346449     -ATTT-------AAAG-------------CTCAGCCCA--GACCAGCAAGCA-CA--TCA
27781305     GATTCTCTGCATAAAGGGTT-----TACACTTGGTCCATTGTGGAAGAAGGAGCAGGTTG
              ***        * **              *    ***  *   *  **  * **  *  
Prim.cons.   GATTACAGGCATAAAGAGCTGAACGTTCTCTCAGCCCATTGAGCAGCAAACAACAGGTGA

                   2230      2240      2250      2260      2270      2280
                      |         |         |         |         |         |
299xxx0      AAGTGAAAAGTC-CTAATG------TAACATTTATCT----TTTCTT----------CCA
31341485     AAGTGAAAAGTC-CTAATG------TAACATTTATCT----TTTCTT----------CCA
21752978     AAGTCAGAAGTCTCTAATA------TATCATTTGTCT----TTT-TT----------CCA
180927       AAGTCAGAAGTCTCTAATA------TATCATTTGTCT----TTT-TT----------CCA
12653426     AAGTCAGAAGTCTCTAATA------TATCATTTGTCT----TTT-TT----------CCA
13111930     AAGTCAGAAGTCTCTAATA------TATCATTTGTCT----TTT-TT----------CCA
4507842      AAGTCAGAAGTCTCTAATA------TATCATTTGTCT----TTT-TT----------CCA
26353031     AAGTCAGGTCTC-TTAATAATTAATTAATGTTAATTCAACATTT-TC----------TCA
13097347     AAGTCAGGTCTC-TTAATAATTAATTAATGTTAATTCAACATTT-TC----------TCA
12836875     AAGTCAGGTCTT-TTAATAATTAATTAATGTTAATTCAACATTT-TT----------TCA
26346449     AAGTCAGGTCTC-TTAATAATTAATTAATGTTAATTCAACATTT-TC----------TCA
27781305     ATGTCATCAATTCTCTGTGA----ATAACTTGTGTGTA-TATTTATCACTGCAGACACCA
             * ** *    *      *       **   *   *      *** *            **
Prim.cons.   AAGTCAGAAGTCTCTAATAATTAATTAACATTT2TCTAACATTTCTTACTGCAGACACCA

                   2290      2300      2310      2320      2330      2340
                      |         |         |         |         |         |
299xxx0      GTGAGAGGAAATATA--AAGCATAAATAT-------------AGG----TAATTGTTCCC
31341485     GTGAGAGGAAATATA--AAGCATAAATAT-------------AGG----TAATTGTTCCC
21752978     GTGAGGTAAAATA----AGGCATAAATGC-------------AGG----TAATTATTCCC
180927       GTGAGGTAAAATA----AGGCATAAATGC-------------AGG----TAATTATTCCC
12653426     GTGAGGTAAAATA----AGGCATAAATGC-------------AGG----TAATTATTCCC
13111930     GTGAGGTAAAATA----AGGCATAAATGC-------------AGG----TAATTATTCCC
4507842      GTGAGGTAAAATA----AGGCATAAATGC-------------AGG----TAATTATTCCC
26353031     ATGAAGC-----------------------------------------------------
13097347     ATGAAGTAAAAAA-A--AAAAAAAA-----------------------------------
12836875     ATGAAGTAAAAAA-A--AAAAAAAAACTT-------------AAAAGCATAGTGACTCCC
26346449     ATG---------------------------------------------------------
27781305     GAGAATGGAAGCAGGATAAACATTACTGTCACAGTTTTGGGGAGG-----AATTGATCCT
               *                                                         
Prim.cons.   GTGAGGTAAAATATAATA2GCATAAATGCCACAGTTTTGGGGAGGAGCATAATTATTCCC

                   2350      2360      2370      2380      2390      2400
                      |         |         |         |         |         |
299xxx0      AA-------CTGACCTAAAGTCA-----ATAAAGCATTCTATTTAAATGTT---------
31341485     AA-------CTGACCTAAAGTCA-----ATAAAGCATTCTATTTAAATGTT---------
21752978     AG-------CTGACCTAAAGTCA-----ATAAAACATTCTGTTTAAGTGTT---------
180927       AG-------CTGACCTAAAGTCA-----ATAAAACATTCTGTTT----------------
12653426     AG-------CTGACCTAAAGTCA-----ATAAAACATTCTGTTTAAAAAAAAAAAAAAAA
13111930     AG-------CTGACCTAAAGTCA-----ATAAAACATTCTGTTTAAAAAAAAAAAAAAAA
4507842      AG-------CTGACCTAAAGTCA-----ATAAAACATTCTGTTT----------------
26353031     ------------------------------------------------------------
13097347     ------------------------------------------------------------
12836875     AG-------CTGTCCTAGTGTCA-----ATAAAGCATTGTGTGG----------------
26346449     ------------------------------------------------------------
27781305     GGTTATTGACTGCCCTAAAGGCATGGATGTCAAACATTTAATTAAAGAACTATTTCTATC
                                                                         
Prim.cons.   AGTTATTGACTGACCTAAAGTCATGGATATAAAACATTCTGTTTAAA22TTAAAAAAAAA

                   2410
                      |
299xxx0      ----------------
31341485     ----------------
21752978     ----------------
180927       ----------------
12653426     AAAAAAAAAAA-----
13111930     AAAA------------
4507842      ----------------
26353031     ----------------
13097347     ----------------
12836875     ----------------
26346449     ----------------
27781305     AAAAAAAAAAAAAAAA
                                                                         
Prim.cons.   AAAAAAAAAAAAAAAA
Alignment data :
Alignment length : 2416
Identity (*) : 870 is 36.01 %
Strongly similar (:) : 0 is 0.00 %
Weakly similar (.) : 0 is 0.00 %
Different : 1546 is 63.99 %
Sequence 0001 : 299xxx0 ( 1619 residues).
Sequence 0002 : 31341485 ( 1619 residues).
Sequence 0003 : 21752978 ( 2307 residues).
Sequence 0004 : 180927 ( 1588 residues).
Sequence 0005 : 12653426 ( 1655 residues).
Sequence 0006 : 13111930 ( 1607 residues).
Sequence 0007 : 4507842 ( 1578 residues).
Sequence 0008 : 26353031 ( 1517 residues).
Sequence 0009 : 13097347 ( 1550 residues).
Sequence 0010 : 12836875 ( 1616 residues).
Sequence 0011 : 26346449 ( 1508 residues).
Sequence 0012 : 27781305 ( 1632 residues).
CLUSTALW options used :
dnamatrix=iub
endgaps=1
gapdist=8
gapext=0.05
gapopen=10.0
ktuple=1
maxdiv=40
outorder=aligned
pairgap=3
score=percent
topdiags=5
type=DNA
window=5
Result files (text) :
CLUSTALW
User : public@131.243.195.148. Last modification time : Mon Aug 4 02:30:42 2003. Current time : Mon Aug 4 02:30:42 2003 This service is supported by Ministere de la recherche (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE) . Comments.