SU 8: *original AA sequence >UDELPATPK0073C10F udel.pat.pk0073.c10.f Length = 535 Frame = +1 GEPEEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK --------------------------------------------------------------------------------- *Blast in Genebank >gi|385936|gb|S61826.1|S61826 hinge=OXPHOS system complex III mitochondrial subunit {5' region, Alu repeats I-VI, transcription enhancer} [human, spermatocyte, Genomic, 2665 nt] Length = 2665 1 gatccccgtt gctaaaaata ttttctttta attagcgagg tgtggtggta tgtacctcta 61 gtcccagcta ctcgggagac cgaggtggga ggatcacttg agccatgatt gtgccactgc 121 actccagcct gtgtgacaca gcaagacctt gtctcaaaaa aaaaaaaatt aaattaaaaa 181 aaccctctgt tgtgcaaagg ccgattttgg ccctggagaa agaatcaggg tcagccaggt 241 gcggtggctc acgcctataa tcccagcact ttgggaggcc gaggcgggtg gatcacttga 301 ggtcaggaat tccagaccag cctggacaac atggcaaaac cccgtcttta ctaaaaatac 361 aaaaattagc cgggcatggt ggtgcatgcc tgtaattcca gctactcggg aggctaaggt 421 aggagaatca cttgaatccg ggaggcagag gttgcagtga gcggagatcg tgccactgca 481 ctccagcctg ggcaacagag tgagactctg tctcaaaaac aaaacaaaac aaaaacagaa 541 agaatcagag tcaacaaatc agtatggatg cagattcctc agatgccagg aatcccagga 601 taaatggcag gggtgaacca aatacttccc attcttccct caccaccctc ctccatccaa 661 taaagaagta aataaattcc tcaagtcccc tctgccccag tgcatggaat gtttacctgt 721 ggactaggac tggtctacat gccaaacagg ccttgcctcc tgggcggcat gtttgcaggg 781 gatccttgct gatgatgttg gcctcctcct gcaccctccc actccatggc tgtctcacct 841 gagagagctt tcttccttta gcattaagtg tgagtcctga taaattcaaa aaagcctcca 901 ggtgacatca ttttaacacc agttaacaat cacaaatctg ggtgaatgag cctcagagtt 961 tttcttgaca gtagtgtgcg tgcgtgtgtg tgtgcgtgtt ttccatggaa aaataaaatg 1021 tattacacaa actatcagta ttaattacag aaaggtggcc aggtgcagtg cctcacgcct 1081 gtaatcctgg cactttggga ggccaaggcg ggcagattgc ctgagctcag gagtttgaga 1141 ccagcctggt caaacatggt gaaaccctgt atctactaaa aatacaaaac attagctggg 1201 cgtggtggcg catgcctgta gtctcaggta ctcggaaggg tgaggcacaa gaatcgcttg 1261 agtctggaag gtggaggttg cagtgagccg agaacacgcc actaaactcc agccggggtg 1321 acagagcaag actctgtctc aaaaaacaaa caaacaactt aattacagaa aggtaagcct 1381 ggccaatagg tcaggaaaag cagccccact gcagatccac accactacgg aaacttgagg 1441 caccacacac atgactttgc tgactggggg caaaggatga actagtgagc aaacttggga 1501 ggctgagaca ggaggatcgc ttgaacctgg gaggtagagg ttgcagtgag ccaagatcgc 1561 accactgctc tccagccagg tgacagagcg agactccagc tcaaaaaaaa aaaaaaagtc 1621 aagatattaa atatgaaagc aacactttat tttttatttt attttatttt aagacagggt 1681 ctctctctgt cacccagact ggagtacagt gacatgatct ctgcttcact gtgatctctg 1741 cctcccaggc tcaaactatc ctcccacatc agcctcccaa atagctggga ctacaggggc 1801 ccaccaccac acctgactaa tttttgtatt tttggtagag atgcggtttc accatgttgc 1861 ccagcctgat cttgaacttc tggattcaag tgatccgccc tcctcggcct cccaaagtgc 1921 tgggactaca ggcttgagcc acctcgccca gctgaaagtg acactttaat actttcagga 1981 aattatagga gatgattgtt aagagctcag gataaagaga agtttctggc cgggaacgtg 2041 gctcacacct gtaatcccag cactttcagt ggcggagcac ctgtggccaa gagtttgaga 2101 ccagcctggc caacatggtg aaaccccatc tctactaaaa atacaaaaat tgaggtgccg 2161 ctgttgctgc tcgtgttaaa tctagaaccg tagccagaca tgggactgga ggacgagcaa 2221 aagatgctta ccgaatccgg agatcctgag gaggaggaag aggaagagga ggaattagtg 2281 gatcccctaa caacagtgag agagcaatgc gagcagttgg agaaatgtgt aaaggcccgg 2341 gagcggctag agctctgtga tgagcgtgta tcctctcgat cacatacaga agaggattgc 2401 acggaggagc tctttgactt cttgcatgcg agggaccatt gcgtggccca caaactcttt 2461 aacaacttga aataaatgtg tggacttaat tcaccccagt cttcatcatc tgggcatcag 2521 aatatttcct tatggttttg gatgtaccat ttgtttctta tttgtgtaac tgtaagttca 2581 catgaacctc atgggtttgg cttaggctgg tagcttctat gtaattcgca atgattccat 2641 ctaaataaaa gttctatgat ctgca >gi|12655142|gb|BC001426.1|BC001426 1 ggcacgaggc tgggttaggt gccgctgttg ctgctcgtgt tgaatctaga accgtagcca 61 gacatgggac tggaggacga gcaaaagatg cttaccgaat ccggagatcc tgaggaggag 121 gaagaggaag aggaggaatt agtggatccc ctaacaacag tgagagagca atgcgagcag 181 ttggagaaat gtgtaaaggc ccgggagcgg ctagagctct gtgatgagcg tgtatcctct 241 cgatcacata cagaagagga ttgcacggag gagctctttg acttcttgca tgcgagggac 301 cattgcgtgg cccacaaact ctttaacaac ttgaaataaa tgtgtggact taattcaccc 361 cagtcttcat catctgggca tcagaatatt tccttatggt tttggatgta ccatttgttt 421 cttatttgtg taactgtaag ttcacatgaa cctcatgggt ttggcttagg ctggtagctt 481 ctatgtaatt cgcaatgatt ccatctaaat aaaagttcta tgatctgcaa aaaaaaaaaa 541 aaaaaaa >gi|12804962|gb|BC001934.1|BC001934 Homo sapiens, Similar to ubiquinol-cytochrome c reductase hinge protein, clone MGC:4010 IMAGE:2823237, mRNA, complete cds Length = 546 1 ctgaactggg ttaggtgccg ctgttgctgc tcgtgttgaa tctagaaccg tagccagaca 61 tgggactgga ggacgagcaa aagatgctta ccgaatccgg agatcctgag gaggaggaag 121 aggaagagga ggaattagtg gatcccctaa caacagtgag agagcaatgc gagcagttgg 181 agaaatgtgt aaaggcccgg gagcggctag agctctgtga tgagcgtgta tcctctcgat 241 cacatacaga agaggattgc acggaggagc tctttgactt cttgcatgcg agggaccatt 301 gcgtggccca caaactcttt aacaacttga aataaatgtg tggacttaat tcaccccagt 361 cttcatcatc tgggcatcag aatatttcct tatggttttg gatgtaccat ttgtttctta 421 tttgtgtaac tgtaagttca catgaacctc atgggtttgg cttaggctgg tagcttctat 481 gtaattcgca atgattccat ctaaataaaa gttctatgat ctgcaaaaaa aaaaaaaaaa 541 aaaaaa >gi|15929490|gb|BC015177.1|BC015177 Homo sapiens, clone MGC:10149 IMAGE:3905169, mRNA, complete cds Length = 537 Score = 129 bits (325), Expect = 2e-29 Identities = 60/66 (90%), Positives = 61/66 (92%) Frame = +1 1 gaactgggtt aggtgccgct gttgctgctc gtgttgaatc tagaaccgta gccagacatg 61 ggactggagg acgagcaaaa gatgcttacc gaatccggag atcctgagga ggaggaagag 121 gaagaggagg aattagtgga tcccctaaca acagtgagag agcaatgcga gcagttggag 181 aaatgtgtaa aggcccggga gcggctagag ctctgtgatg agcgtgtatc ctctcgatca 241 catacagaag aggattgcac ggaggagctc tttgacttct tgcatgcgag ggaccattgc 301 gtggcccaca aactctttaa caacttgaaa taaatgtgtg gacttaattc accccagtct 361 tcatcatctg ggcatcagaa tatttcctta tggttttgga tgtaccattt gtttcttatt 421 tgtgtaactg taagttcaca tgaacctcat gggtttggct taggctggta gcttctatgt 481 aattcgcaat gattccatct aaataaaagt tctatgatct gcaaaaaaaa aaaaaaa >gi|30585018|gb|BT008090.1| Synthetic construct Homo sapiens ubiquinol-cytochrome c reductase hinge protein mRNA, partial cds Length = 276 Score = 129 bits (325), Expect = 2e-29 Identities = 60/66 (90%), Positives = 61/66 (92%) Frame = +1 1 atgggactgg aggacgagca aaagatgctt accgaatccg gagatcctga ggaggaggaa 61 gaggaagagg aggaattagt ggatccccta acaacagtga gagagcaatg cgagcagttg 121 gagaaatgtg taaaggcccg ggagcggcta gagctctgtg atgagcgtgt atcctctcga 181 tcacatacag aagaggattg cacggaggag ctctttgact tcttgcatgc gagggaccat 241 tgcgtggccc acaaactctt taacaacttg aaattg >gi|30582978|gb|BT007070.1| Homo sapiens ubiquinol-cytochrome c reductase hinge protein mRNA, complete cds Length = 276 Score = 129 bits (325), Expect = 2e-29 Identities = 60/66 (90%), Positives = 61/66 (92%) Frame = +1 1 atgggactgg aggacgagca aaagatgctt accgaatccg gagatcctga ggaggaggaa 61 gaggaagagg aggaattagt ggatccccta acaacagtga gagagcaatg cgagcagttg 121 gagaaatgtg taaaggcccg ggagcggcta gagctctgtg atgagcgtgt atcctctcga 181 tcacatacag aagaggattg cacggaggag ctctttgact tcttgcatgc gagggaccat 241 tgcgtggccc acaaactctt taacaacttg aaatag >gi|12848046|dbj|AK011734.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610041P16 product:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN, MITOCHONDRIAL PRECURSOR (EC 1.10.2.2) (MITOCHONDRIAL HINGE PROTEIN) (CYTOCHROME C1, NONHEME 11 KDA PROTEIN) (COMPLEX III SUBUNIT VIII) homolog [Homo sapiens], full insert sequence Length = 907 Score = 127 bits (318), Expect = 1e-28 Identities = 59/66 (89%), Positives = 60/66 (90%) Frame = +2 1 aatactggat gaacactgcc atggtgacag ggtggtcccc atgcctggca ggtataatcc 61 aggacttgca cctccccagt gcagtaccta caccctggaa acaggccaag cctcaaaccc 121 accccccccc gctatgctcc caagccctca gtctcccacc ccacccttcg gcttcctgga 181 accgtgcaca ggttggcccc aagagcagct gtcacctcac atgagaccag gacccagagc 241 cccagcctaa gctgttaaga acataaggct tccccgtccc cacccccgca tcatcacccc 301 acgtctgaag aaatcagatg ttcccatgct tagccaccta gctccccccc cccccccccc 361 ccgccccccc cccccccccc cccccccgct tactagtcct tcttaaacct gaagtggagt 421 actactctgg ttgcgcttgt tggatcccaa accggctccc gacatgggac tagaggacga 481 acgaaagatg ctcactggat ctggagaccc caaagaggaa gaagaggaag aactagtgga 541 ccccctaaca acagtgagag agcactgtga acagctggag aagtgtgtaa aggcccggga 601 acgactagag ttgtgtgata atcgcgtgtc ttcccggtca cagacagaag aggattgtac 661 agaggagctc tttgacttct tgcatgcacg ggaccactgt gtggcccaca agctctttaa 721 aaacttgaag taaatgtgca gattcgtcct cctcagcctt gtcactggga atcaggaaca 781 gttccttgtg gttctggacg tcggtgtctg atggagtgag ttctcgagaa cctcactgac 841 tttggcggta gcttctcttc tgtgtgacta gcagtgactt catcttaata aactgatctg 901 caaactc >gi|15030246|gb|BC011388.1| Mus musculus RIKEN cDNA 2610041P16 gene, mRNA (cDNA clone MGC:11643 IMAGE:3597862), complete cds Length = 506 Score = 127 bits (318), Expect = 1e-28 Identities = 59/66 (89%), Positives = 60/66 (90%) Frame = +1 1 gtactactct ggttgcgctt gttggatccc aaaccggctc ccgacatggg actagaggac 61 gaacgaaaga tgctcactgg atctggagac cccaaagagg aagaagagga agaactagtg 121 gaccccctaa caacagtgag agagcactgt gaacagctgg agaagtgtgt aaaggcccgg 181 gaacgactag agttgtgtga taatcgcgtg tcttctcggt cacagacaga agaggattgt 241 acagaggagc tctttgactt cttgcatgca cgggaccact gtgtggccca caagctcttt 301 aaaaacttga agtaaatgtg cagattcgtc ctcctcagcc ttgtcactgg gaatcaggaa 361 cagttccttg tggttctgga cgtcggtgtc tgatggagtg agttctcgag aacctcactg 421 actttggcgg tagcttctct tctgtgtgac tagcagtgac ttcatcttaa taaactgatc 481 tgcaaactta aaaaaaaaaa aaaaaa >gi|26353129|dbj|AK088185.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430005M06 product:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN, MITOCHONDRIAL PRECURSOR (EC 1.10.2.2) (MITOCHONDRIAL HINGE PROTEIN) (CYTOCHROME C1, NONHEME 11 KDA PROTEIN) (COMPLEX III SUBUNIT VIII) homolog [Homo sapiens], full insert sequence Length = 513 Score = 127 bits (318), Expect = 1e-28 Identities = 59/66 (89%), Positives = 60/66 (90%) Frame = +1 1 gcttcttaaa cctgaagtgg agtactactc tggttgcgct tgttggatcc caaaccggct 61 cccgacatgg gactagagga cgaacgaaag atgctcactg gatctggaga ccccaaagag 121 gaagaagagg aagaactagt ggacccccta acaacagtga gagagcactg tgaacagctg 181 gagaagtgtg taaaggcccg ggaacgacta gagttgtgtg ataatcgcgt gtcttcccgg 241 tcacagacag aagaggattg tacagaggag ctctttgact tcttgcatgc acgggaccac 301 tgtgtggccc acaagctctt taaaaacttg aagtaaatgt gcagattcgt cctcctcagc 361 cttgtcactg ggaatcagga acagttcctt gtggttctgg acgtcggtgt ctgatggagt 421 gagttctcga gaacctcact gactttggcg gtagcttctc ttctgtgtga ctagcagtga 481 cttcatctta ataaactgat ctgcaaactt gct >gi|26343920|dbj|AK054005.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230011N16 product:UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN, MITOCHONDRIAL PRECURSOR (EC 1.10.2.2) (MITOCHONDRIAL HINGE PROTEIN) (CYTOCHROME C1, NONHEME 11 KDA PROTEIN) (COMPLEX III SUBUNIT VIII) homolog [Homo sapiens], full insert sequence Length = 512 Score = 127 bits (318), Expect = 1e-28 Identities = 59/66 (89%), Positives = 60/66 (90%) Frame = +2 1 gccttcttaa acctgaagtg gagtactact ctggttgcgc ttgttggatc ccaaaccggc 61 tcccgacatg ggactagagg acgaacgaaa gatgctcact ggatctggag accccaaaga 121 ggaagaagag gaagaactag tggaccccct aacaacagtg agagagcact gtgaacagct 181 ggagaagtgt gtaaaggccc gggaacgact agagttgtgt gataatcgcg tgtcttcccg 241 gtcacagaca gaagaggatt gtacagagga gctctttgac ttcttgcatg cacgggacca 301 ctgtgtggcc cacaagctct ttaaaaactt gaagtaaatg tgcagattcg tcctcctcag 361 ccttgtcact gggaatcagg aacagttcct tgtggttctg gacgtcggtg tctgatggag 421 tgagttctcg agaacctcac tgactttggc ggtagcttct cttctgtgtg actagcagtg 481 acttcatctt aataaactga tctgcaaact tg -------------------------------------------------------------------------------------------------- i took one of these strands and did a search in UD chick ES pgn1c.pk016.l8 length=491 100 1e-20 pgl1n.pk013.n10 length=494 100 1e-20 pat.pk0073.c10.f length=535 100 1e-20 pgm2n.pk010.f10 length=657 52 2e-06 pgl1n.pk001.m13 length=505 52 2e-06 pgf1n.pk003.i4 length=431 52 2e-06 >pgn1c.pk016.l8 GGGTTGCGAG ACACCGTTGT TCATGCCGGG GAGCCCGAGG AGGAAGAGGA GGAGGAGCTG GTGGACCCCC TCACCACGAT CAGGGAGCAC TGTGAGCAGA CGGAGAAGTG TGTGAAGGCC CGGGAGCGCC TGGAGCTGTG CGATGCGCGG GTGTCCTCTC GGTCCCACAC AGAGGAGCAG TGCACGGAGG AGCTCTTCGA CTTTCTGCAT GCTCGGGACC ACTGTGTTGC CCACAAACTC TTCAATAAGC TGAAGTGAAT GCAGGAGTGA TTGTCCATCT GCTTCTATAG TCCATCAGAA GAGCCTTGTC AGTGCACAGT ACTGCTTCTG CCTGTTTATT GCCAATGTGA AGTACAAACA AAGTGGCTTC CTGGCAGTGA CTGAGCACCA GAATGTCGCT GTGTCTGTTC TCATTGAAGA TGTGCAGCTA CACAAAAACC ATGTGGATGT TCTGTAATTT TCCATATTAA ACATTTGAAG TTCCTGTGGA A >pgl1n.pk013.n10 Length: 494 Standard View CCATGGGGCT GCGAGACACC GTTGTTCATG CCGGGGAGCC CGAGGAGGAA GAGGAGGAGG AGCTGGTGGA CCCCCTCACC ACGATCAGGG AGCACTGTGA GCAGACGGAG AAGTGTGTGA AGGCCCGGGA GCGCCTGGAG CTGTGCGATG CGCGGGTGTC CTCTCGGTCC CACACAGAGG AGCAGTGCAC GGAGGAGCTC TTCGACTTTC TGCATGCTCG GGACCACTGT GTTGCCCACA AACTCTTCAA TAAGCTGAAG TGAATGCAGG AGTGATTGTC CATCTGCTTC TATAGTCCAT CAGAAGAGCC TTGTCGGTGC ACAGTACTGC TTCTGCCTGT TTATTGCCAA TGTGAAGTAC AAACAAAGTG GCTTCCTGGC AGTGACTGAG CACCAGAATG TCGCTGTGTC TGTTCTCATT GAAGATGTGC AGCTACACAA AAACCACGTG GATGTTCTGT AATTTTCCAT ATTAAACATT TGAAGTTCCT GTGG >pat.pk0073.c10.f Length: 535 Standard View GTGGCACTTC CGGCGGGTGA CCCTGGTTAG TCCTCTCGTA CCGCCATGGG GCTGCGAGAC ACCGTTGTTC ATGCCGGGGA GCCCGAGGAG GAAGAGGAGG AGGAGCTGGT GGACCCCCTC ACCACGATCA GGGAGCACTG TGAGCAGACG GAGAAGTGTG TGAAGGCCCG GGAGCGCCTG GAGCTGTGCG ATGCGCGGGT GTCCTCTCGG TCCCACACAG AGGAGCAGTG CACGGAGGAG CTCTTCGACT TTCTGCATGC TCGGGACCAC TGTGTTGCCC ACAAACTCTT CAATAAGCTG AAGTGAATGC AGGAGTGATT GTCCATCTGC TTCTATAGTC CATCAGAAGA GCCTTGTCGG TGCACAGTAC TGCTTCTGCC TGTTTATTGC CAATGTGAAG TACAAACAAA GTGGCTTCCT GGGCAGTGAC TGAGCACCAG AATGTCCTGT GTCTGTTCCT CAATTGAAGA TTGCAGCTAC ACAAAAACAC GTGGATGTTC CTGTAATTCC ATATAAACAT TGAAATTCCC NGTGG ------------------------------------------------------------------- *alignment: CLUSTAL W (1.8) multiple sequence alignment pgn1cpk016l8 ------------------------------------------------GGGTTGCGAGAC pgl1npk013n10 -------------------------------------------CCATGGGGCTGCGAGAC patpk0073c10f GTGGCACTTCCGGCGGGTGACCCTGGTTAGTCCTCTCGTACCGCCATGGGGCTGCGAGAC *** ******** pgn1cpk016l8 ACCGTTGTTCATGCCGGGGAGCCCGAGGAGGAAGAGGAGGAGGAGCTGGTGGACCCCCTC pgl1npk013n10 ACCGTTGTTCATGCCGGGGAGCCCGAGGAGGAAGAGGAGGAGGAGCTGGTGGACCCCCTC patpk0073c10f ACCGTTGTTCATGCCGGGGAGCCCGAGGAGGAAGAGGAGGAGGAGCTGGTGGACCCCCTC ************************************************************ pgn1cpk016l8 ACCACGATCAGGGAGCACTGTGAGCAGACGGAGAAGTGTGTGAAGGCCCGGGAGCGCCTG pgl1npk013n10 ACCACGATCAGGGAGCACTGTGAGCAGACGGAGAAGTGTGTGAAGGCCCGGGAGCGCCTG patpk0073c10f ACCACGATCAGGGAGCACTGTGAGCAGACGGAGAAGTGTGTGAAGGCCCGGGAGCGCCTG ************************************************************ pgn1cpk016l8 GAGCTGTGCGATGCGCGGGTGTCCTCTCGGTCCCACACAGAGGAGCAGTGCACGGAGGAG pgl1npk013n10 GAGCTGTGCGATGCGCGGGTGTCCTCTCGGTCCCACACAGAGGAGCAGTGCACGGAGGAG patpk0073c10f GAGCTGTGCGATGCGCGGGTGTCCTCTCGGTCCCACACAGAGGAGCAGTGCACGGAGGAG ************************************************************ pgn1cpk016l8 CTCTTCGACTTTCTGCATGCTCGGGACCACTGTGTTGCCCACAAACTCTTCAATAAGCTG pgl1npk013n10 CTCTTCGACTTTCTGCATGCTCGGGACCACTGTGTTGCCCACAAACTCTTCAATAAGCTG patpk0073c10f CTCTTCGACTTTCTGCATGCTCGGGACCACTGTGTTGCCCACAAACTCTTCAATAAGCTG ************************************************************ pgn1cpk016l8 AAGTGAATGCAGGAGTGATTGTCCATCTGCTTCTATAGTCCATCAGAAGAGCCTTGTCAG pgl1npk013n10 AAGTGAATGCAGGAGTGATTGTCCATCTGCTTCTATAGTCCATCAGAAGAGCCTTGTCGG patpk0073c10f AAGTGAATGCAGGAGTGATTGTCCATCTGCTTCTATAGTCCATCAGAAGAGCCTTGTCGG ********************************************************** * pgn1cpk016l8 TGCACAGTACTGCTTCTGCCTGTTTATTGCCAATGTGAAGTACAAACAAAGTGGCTTCCT pgl1npk013n10 TGCACAGTACTGCTTCTGCCTGTTTATTGCCAATGTGAAGTACAAACAAAGTGGCTTCCT patpk0073c10f TGCACAGTACTGCTTCTGCCTGTTTATTGCCAATGTGAAGTACAAACAAAGTGGCTTCCT ************************************************************ pgn1cpk016l8 GG-CAGTGACTGAGCACCAGAATGTCGCTGTGTCTGTTCTC--ATTGAAGATGTGCAGCT pgl1npk013n10 GG-CAGTGACTGAGCACCAGAATGTCGCTGTGTCTGTTCTC--ATTGAAGATGTGCAGCT patpk0073c10f GGGCAGTGACTGAGCACCAGAATGTC-CTGTGTCTGTTCCTCAATTGAAGAT-TGCAGCT ** *********************** ************ ********* ******* pgn1cpk016l8 ACACAAAAACCATGTGGATGTTC-TGTAATTTTCCATATTAAACATTTGAAGTTCCTGTG pgl1npk013n10 ACACAAAAACCACGTGGATGTTC-TGTAATTTTCCATATTAAACATTTGAAGTTCCTGTG patpk0073c10f ACACAAAAAC-ACGTGGATGTTCCTGTAAT--TCCATAT-AAACATTGAAATTCCCNGTG ********** * ********** ****** ******* ******* ** * ** *** pgn1cpk016l8 GAA pgl1npk013n10 G-- patpk0073c10f G-- * ---------------------------------------------------------------------------- Frame 6 >pgn1cpk016l8 Frame 0 GLRDTVVHAGEPEEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQ CTEELFDFLHARDHCVAHKLFNKLKMQELSICFYSPSEEPCQCTVLLLPVYCQCEVQT KWLPGSDAPECRCVCSHRCAATQKPCGCSVIFHIKHLKFLW >pgl1npk013n10 Frame 2 MGLRDTVVHAGEPEEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEE QCTEELFDFLHARDHCVAHKLFNKLKMQELSICFYSPSEEPCRCTVLLLPVYCQCEVQ TKWLPGSDAPECRCVCSHRCAATQKPRGCSVIFHIKHLKFLW >patpk0073c10f Frame 0 VALPAGDPGSSRTAMGLRDTVVHAGEPEEEEEEELVDPLTTIREHCEQTEKCVKARERL ELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLKMQELSICFYSPSEEPCR CTVLLLPVYCQCEVQTKWLPGQLSTRMSCVCSSIEDCSYTKTRGCSCNSITLKFXV --------------------------------------------------------------------------- *AA alignment: see html file