Prim.cons. MLSVAARSRHSRPSYRPRPAGWRALRPWYSRSSRESP2L2222SVLCRESLRGQAAAALV
0 10
20 30
40
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Bostaurus
SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGV
Chicken
VHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVAT
Sachcere
-KSTYRTPNFDDVLK---------ENNDADKGRSYAYFMVGAMGLLS
Rbcasul
MSHAEDNAGTRRDFLYHATAATGVVV
. : * .: * ..: :
Prim.cons. 22222222222222H3D33VPDFS3YRRP3V3D3TKSS4DSSE4RKGFSYLVTA2TGV4V
50 60
70 80
90 100
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Bostaurus AYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEID
Chicken AYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEIN
Sachcere SAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQ
Rbcasul TGAA--VWP-LINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIE
:
.* . ::..:.*:*** *::.: :.:: : *.::..**:***:*:*:*
:*:
Prim.cons. AYAAKNVV4QFISSMSASADVLAM2KIE2KLS2IPEGKNVA2KWRGKP2F2RHRT4KEI4
110 120
130 140
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Bostaurus QEAAVEVSQLRDP-----------QHDLERV-------KKPEWVILIGVCTHLGCVPIAN
Chicken QEAEVDVSKLRDP-----------QHDLDRV-------KKPEWVILVGVCTHLGCVPIAN
Sachcere EANSVDMSALKDP-----------QTDADRV-------KDPQWLIMLGICTHLGCVPIGE
Rbcasul LARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGD
* :. *:*. .
* * : :*::::*:********:.:
Prim.cons. Q2ASVDVSALRDPQHDNANKPGAEATDENRTLPALDRVKKPEW2I2LGVCTHLGCVPI2N
150 160
170 180
190 200
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Bostaurus -AGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG
Chicken -SGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG
Sachcere -AGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGD-KVIVG
Rbcasul KSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG
:*****::********* :********* **::* * .: : :*
Prim.cons. K2GDFGG22CPCHGSHYDASGRIRKGPAPLNLE2P4YEFVGDD4VIVG
Underlined region 137-181 is defined by Iwata et al as the cluster-binding
fold.
Pro175 may be cis in int position.
3-10 helix centered about114 (just after long helix) and 124
loops before and after the 124 helix are longer in Rb.
comparing yeast 1ezv and beef 1be3- towards N-term
Start to diverge by 36, quite far appart but alignable at 32, then
completely different till ~15 (y 44)
Then close to 6 (yeast 35)
E1 to E11 are extended like beta, and lying over the multisubunit beta strand involving D,G,A