10        20        
                                                         |         |         |      
Sinorhizobiummeliloti      ----------------------------------------------MTNVTRSRPLSPHL
Agrobacteriumtumefaciens   -----------MIKRRGWCNAHSFVMCCCLGASCLNGRTGKRREVLMANVTNNRPLSPHL
Mesorhizobiumloti          ---------------------------------------MSKSPATREFARRERPLSPHL
Bradyrhizobiumjaponicum    -----------------------------------------------MTARIERPLSPHM
Caulobactercrescentus      -------------------------------------------MTDTSRGLPERPMSPHL
Xylellafastidiosaac        -------------------------------------MCCSPGITSSTMATRERPLSPHL
Paracoccusdenitrificans    ---------------------------------------------MADVNRGNRPLSPHL
bosxxx0                    -------------------------------VPLGTTAKEEMERFWSKNTTLNRPLSPHI
Homoxx1                    -------------------------------VPLGTTAKEEMERFWNKNIGSNRPLSPHI
Rickettsiaprowazekii       ------------------------------------------MTKIKQEIYNKRPTSPHL
Rickettsiaconorii          ------------------------------------------MTKTKQEIYNKRPTSPHL
Chondruscrispus            --------------------------------------------MFIKFKISNRPIAPHL
Porphyrapurpurea           ------------------------------------------------MYNINRPISPHL
Marchantiapolymorpha       -------------------------------------------------MKINRPLSPHL
Reclinomonasamericana      ---------------------------------MISINFNFLKIKGIINMNINRPISPHL
EcoliSDH13991_DEECS4       ---------------------------------------------MIRNVKKQRPVNLDL
Yersiniapestis             ---------------------------------------------MGKTVKKQRPVNLDL
Vibriocholerae             -------------------------------------------MSKPVKERKSRPVNLDL
Shewanellafrigidimarina    ------------------------------------------------------------
Pseudomonasaeruginosa      ---------------------------------------------MKKAVNSKRPVNLDL
Coxiellaburnetii           -------------------------------------------------MNAKRPVNLDL
NeisseriameningitidisMC    ------------------------------------------------MSAKPRPVYLDL
Rhodoferaxfermentans       -------------------------------------MSETATSHSKKRPEFRNIEFPSL
Caenorhabditisbriggsae     --MINIPTSILCRLGARSAISRSFGTSVVTKSEAKTPIQKFGWEYLKKQRDMKRPIAPHL
                                                                                     H 
Prim.cons.                 MA22LLRHVGRHCLRAH4SPQLCIRN2V22G2TAMKK2V3FGWEYRIKN333NRPLSPHL

                          30        40        50        60        70            80   
                           |         |         |         |         |             |
Sinorhizobiummeliloti      QIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWVNW-----LFG--TF
Agrobacteriumtumefaciens   QIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWVNW-----AMG--TI
Mesorhizobiumloti          TIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNW-----AFG--TW
Bradyrhizobiumjaponicum    QVYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQA-----FTG--SI
Caulobactercrescentus      QVWRWHITMACSILHRGCVVGLWVGAVILAGWAAALAAGPDAYASYVG-----LLG--SP
Xylellafastidiosaac        QVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGAATWDYFRS-----CLN--LW
Paracoccusdenitrificans    QVYRLPLAAITSIMTRITGHALVAGIVLITWWLVAAVTSPGAFACADW-----VVR--SW
bosxxx0                    SIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKS---LCLG--PA
Homoxx1                    TIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKS---LCLG--PA
Rickettsiaprowazekii       TIYKPQISSTLSILHRMTGVALFFVVSIL-VWWLILSKYDNNYLQLAS-----CC-----
Rickettsiaconorii          TIYKPQISSTLSILYRMTGVALFFAVSIL-VWWLILSKYDNNYLQLAE-----CC-----
Chondruscrispus            LVYTPQLSSLFSIWHRISGVGLAFFFTTFLIFIRIILSSNFACNLLTLIS--FEIS--QW
Porphyrapurpurea           TIYNTQKSSLFSIWHRISGVAMFTLIASPPLFLKLATFSYKSFNILDLM---LNNS--SL
Marchantiapolymorpha       TIYKPQLTSTFSIFHRISGAFLATMVLFSILFFKIGDLSLTFYHFYQYFFFLTFYL--NW
Reclinomonasamericana      TIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSIAYTLNQYS--GF
EcoliSDH13991_DEECS4       QTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSP---EGFEQASAIMGS----F
Yersiniapestis             QTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQ---EGFMQAATIMNS----F
Vibriocholerae             QTISFPISAIASILHRVSGVITFVAVGILLWLLSLSLSSP---VGFMEASNIVDS----F
Shewanellafrigidimarina    ---SFPATRIASILHRISGVIMLFAIGILLWLLNSTLTSA---DGFASVQSLFDG----F
Pseudomonasaeruginosa      RTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSE---EGFEQVKACLTS----P
Coxiellaburnetii           TKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASA---ESFYHLHQLLLHN---G
NeisseriameningitidisMC    PNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLV-----
Rhodoferaxfermentans       ITYRWPLASLASGMHRVSGAIMFFLMPFVIWMFDASISSEVSFARFKAAFNIGMLGIPGF
Caenorhabditisbriggsae     TIYQPQLTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLDFTTFVEYIRG---WNLP--CA
                                      *  H*                                            
Prim.cons.                 2IYRPP2TMI2SILHRISGVALFFGVLLLLWWLLALLSSPA2Y2GF3WAS42LCLGIPSF

                                90       100       110       120       130       140   
                                 |         |         |         |         |         |
Sinorhizobiummeliloti      IGKVVLFGYTWALVHHLLGGIRHLAWDLGYG-YEKHFATRMAKAMIVASATLTLVIWVVG
Agrobacteriumtumefaciens   IGRLILIGYTWALVHHMLGGLRHFMWDLGHG-FDKHFTTKLAKASWVASICLTALIWVIV
Mesorhizobiumloti          LGRLILFGYTWALMHHMLGGVRHLVWDTGAG-LEKHTASKIAWATLVGSVLLTLLIWIAG
Bradyrhizobiumjaponicum    IGRLIVFGYTWALMHHMLSGIRHFVWDLGYG-FKANEREALTWGALIGGIVLTVLIWIVA
Caulobactercrescentus      IGKLVLLGETFAVFFNVAYTIRQTFWDAGKG-FAPRTADMTGAMAIAFAVVATIVTWVIA
Xylellafastidiosaac        YGQCFLLVWTWCFGYHLCNGIRHIAQDFGCG-FAISSFVRSSWASVLGSIVITAGVWVYV
Paracoccusdenitrificans    LGFIILTGSMWALWYHLLAGLRHLFYDAGYG-LEIEQAHKSSQALIAGSVVLAVLTLIVF
bosxxx0                    LIHTAKFALVFPLMYHTWNGIRHLMWDLGKG-LTISQLHQSGVAVLVLTVLSSVGLAAM-
Homoxx1                    LIHTAKFALVFPLMYHTWNGIRHLMWDLGKG-LKIPQLYQSGVVVLVLTVLSSMGLAAM-
Rickettsiaprowazekii       IIKICLVAFSYSWCYHLCNGIRHLFWDIGYG-FSIKAVNITGWCVVVCSILLTMLLWV--
Rickettsiaconorii          IIKICLVAVSYAWFYHLCNGIRHLFWDIGYG-FSIKLVNITGWCVVVGSVLLTVLLWV--
Chondruscrispus            IIIYFNLFILLFLFYHLFNGTRHIIWDFGFL-LDIKYLSKFSLFLLVSLSLILIFQ----
Porphyrapurpurea           ILPWFIVIISVIFLYHIINGIRHFLWDSVVN-VNTESIIKDSNTLLALVFLIMLFKFIL-
Marchantiapolymorpha       FIISLVNFTLLALCYHMSNGVRHLLWDLGFF-LELSKVYTSGIIMLFCAAFLALLNIIRQ
Reclinomonasamericana      LFIAISFFLLLFIFYHLFAGLRHLVWDAGYA-LEIENVYLTGYIMLGLAFLFTLIAWIIF
EcoliSDH13991_DEECS4       FVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLV
Yersiniapestis             FVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLV
Vibriocholerae             FVKFVLWGILTALAYHIAGGIRHLLMDLGHFEE-LESGAASAKVAFAATVVLSLLAGVLV
Shewanellafrigidimarina    VMKFIIWGILTALGYHLLGGIRHLIMDAGHWEE-LASGVSSAKATFVLAVVFSIIAGIWV
Pseudomonasaeruginosa      LAKLVIWGLLSALLYHLVAGVRHLVMDAGVGET-LEGGKRGSKIVIAIAVVLIVLAGVWV
Coxiellaburnetii           WIKLAVWIMLSATLFHLFAGIRHLAMDLGFWES-VPEGRISAYTVFVVSFIAIVLAGVWI
NeisseriameningitidisMC    --KLVLIGVLWAYLHHSLAGIRFLFLDAHKG-LELNTARNTAKAVFASALVLTVVLGALL
Rhodoferaxfermentans       LWKLVALGLIWAMLHHFIAGIRHLWMDTHHHHVSKDFGRQTAAVVLGLTLSLTAVLGAKL
Caenorhabditisbriggsae     VTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIALAIVINS
                                         .H     *H   *                                 
Prim.cons.                 I2KLIL2GILWALLYHLLNGIRHLFWDLGYGELEIE2GYKSAKAVLVLSVVLT2LAWVLV

                                  150   
                                    |
Sinorhizobiummeliloti      YLAR-------
Agrobacteriumtumefaciens   LIVR-------
Mesorhizobiumloti          YMARGA-----
Bradyrhizobiumjaponicum    YAIGGGR----
Caulobactercrescentus      GGIGAF-----
Xylellafastidiosaac        VAGRGGV----
Paracoccusdenitrificans    FVF--------
bosxxx0                    -----------
Homoxx1                    -----------
Rickettsiaprowazekii       -----------
Rickettsiaconorii          -----------
Chondruscrispus            -----------
Porphyrapurpurea           -----------
Marchantiapolymorpha       HWSNGQIPY--
Reclinomonasamericana      -----------
EcoliSDH13991_DEECS4       W----------
Yersiniapestis             W----------
Vibriocholerae             W----------
Shewanellafrigidimarina    W----------
Pseudomonasaeruginosa      W----------
Coxiellaburnetii           W----------
NeisseriameningitidisMC    W----------
Rhodoferaxfermentans       FGLY-------
Caenorhabditisbriggsae     CQNKSKAVKTA
                                                                                       
Prim.cons.                 W22RGG422TA                                                 
Alignment data :
Alignment length : 191
Identity (*) : 4 is 2.09 %
Strongly similar (:) : 1 is 0.52 %
Weakly similar (.) : 1 is 0.52 %
Different : 185 is 96.86 %
Sequence 0001 : Sinorhizobiummeliloti ( 130 residues).
Sequence 0002 : Agrobacteriumtumefaciens ( 165 residues).
Sequence 0003 : Mesorhizobiumloti ( 139 residues).
Sequence 0004 : Bradyrhizobiumjaponicum ( 132 residues).
Sequence 0005 : Caulobactercrescentus ( 135 residues).
Sequence 0006 : Xylellafastidiosaac ( 142 residues).
Sequence 0007 : Paracoccusdenitrificans ( 130 residues).
Sequence 0008 : bosxxx0 ( 169 residues).
Sequence 0009 : Homoxx1 ( 169 residues).
Sequence 0010 : Rickettsiaprowazekii ( 124 residues).
Sequence 0011 : Rickettsiaconorii ( 124 residues).
Sequence 0012 : Chondruscrispus ( 127 residues).
Sequence 0013 : Porphyrapurpurea ( 125 residues).
Sequence 0014 : Marchantiapolymorpha ( 137 residues).
Sequence 0015 : Reclinomonasamericana ( 144 residues).
Sequence 0016 : EcoliSDH13991_DEECS4 ( 129 residues).
Sequence 0017 : Yersiniapestis ( 129 residues).
Sequence 0018 : Vibriocholerae ( 130 residues).
Sequence 0019 : Shewanellafrigidimarina ( 110 residues).
Sequence 0020 : Pseudomonasaeruginosa ( 128 residues).
Sequence 0021 : Coxiellaburnetii ( 125 residues).
Sequence 0022 : NeisseriameningitidisMC ( 125 residues).
Sequence 0023 : Rhodoferaxfermentans ( 147 residues).
Sequence 0024 : Caenorhabditisbriggsae ( 184 residues).
CLUSTALW options used :
endgaps=1
gapdist=8
gapext=0.2
gapopen=10.0
hgapresidues=GPSNDQERK
ktuple=1
matrix=gonnet
maxdiv=30
outorder=aligned
pairgap=3
score=percent
topdiags=5
type=PROTEIN
window=5
Result files (text) :
CLUSTALW
Garnier parameters

Auto calculated
Decision constants HelixSheetTurnCoil
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PREDATOR parameters

Secondary structure data
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SOPM parameters

Number of conformational states
Similarity threshold : Window width : 
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SOPMA parameters

Number of conformational states
Similarity threshold : Window width : 
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User : public@131.243.52.235. Last modification time : Mon Oct 22 07:37:28 2001. Current time : Mon Oct 22 07:37:28 2001This service is supported by Ministere de la recherche (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE) . Comments.