Cytochrome bc1 project . . . . . Printable . . . . Lighter .
mirror sites: aftermarket digitalocean

This site indexed by ISI This site indexed by ISI
Main mirror on digitalocean

Chicken bc1 difference spetraClick for stereo imagesChick bc1 spectra

Local Pages - Other Pages - Chick bc1 - bc1 in PDB - Mechanism - Sequences - 2ndary structure - Figures - Inhibitors - Lipids in PDB

beef bc1 p6522 xtals

Cyt. bc1 peptide sequences:

Structure-based sequence alignment
Sequence Correlator
cyt b alignment: mitoch, bacterial, chloroplast
Cytochrome b/b6-IV
cyt c1 alignment: mitoch, bacterial
Rieske FeS protein sequences
Rieske FeS protein sequences (plant)
beef bc-1 sequences
chicken bc-1 sequences
rabbit bc-1 sequences
human bc-1 sequences
bacterial bc-1 sequences
mitochondrial cyt. b sequences
bacterial cyt. b sequences
cytochrome b6 sequences
cytochrome c1 sequences
misc cytochrome c sequences
mito cytochrome c sequences
cytochrome c2 sequences
Other bc-1 protein sequences
Zhang's alignment tools
Juretic's TMHelix predictor Version 3.1, Version 3.5, Version 4, Results with bovine cyt b (8 TMH)
TMHMM TM Helix predictor Server, Results with bovine cyt b (9 TMH)
TMCompare Reference, programThanks,

Cyt. bc complex structures at the PDB and structure analysis servers

(More detailed tables: all structures, bovine, chicken, yeast, bacterial, cyt b6f.)

subunit contactinterface table, area and residues

Mechanisitic Models

Modified Q Cycle

DSSP: H-bonding and phi-psi analysis, 2ndry structure assignment

native cyt b
native cyt c1
native ironsulfur protein
native subunit 6
DSSP secondary str. abbreviations defined
(old) Cartoon of cyt b secondary structure(chick) and a later version
Cartoon of cyt b secondary structure, with bovine,Rhodobacter numbering.
Cartoon of cyt c1 secondary structure, from bovine,Rba capsulatus.
Rieske ISP secondary structure, bovine from Iwata, 1996; modified for Rba capsulatus
Heme Nomenclature and chirality of MET Ligand monoclinic beef bc1 crystal
The Chicken Genome project at Roslin Institute

Chicken Cytochrome bc1 structure:

Electron transfer by domain movement in cytochrome bc1
Coordinates available here (read 1bcc3bcc.not for explanation)
Rotating bc1 dimer (wait for it to load).
chicken cyt bc1 at two orientations.
Stereo Pictures of the bc1 dimer at three different orientations.
Cytochrome c1+hinge structure
Data and refinement statistics
Artist's conception, and predicted cyt c binding sit e.
Stereo Picture of cyt c1, Rieske, and cyt c ( from the co-crystal).
Cyt. b transmembrane helix arrangement e.

Figures from publications

Preview of High-resolution beef bc1

Prelim version
Nature Paper
ARB figures, pdf, supplementary materials.
Cytochrome f Figures
Cyt bc1 presentation
J.B.B Paper
Biochemical Society Paper
EBEC BBA paper
Rb capsulatus bc1- first phases (2001 Biophys. Soc. poster)

Cyt. bc1 reports:

bibliography, Ed Berry
Potato bc-1 report
Beef bc-1 crystals report
Beef P21 crystals report
Trypanosome bc1 report

Other Local Pages:

Membrane protein database
Cyt. bc-1 crystal pictures
Respiratory Complexes in the chicken genome
Berry Group web page
Rhodobacter bc1 page
Berkeley Complex II page
Berkeley Cyt. cbb3 Cytochrome Oxidase page

Other Protein Complex & Membrane Protein pages

Oxidative Phosphorylation Home Page
MITOMAP- A human mitochondrial genome database
Membrane Protein Data Bank
Membrane Proteins of known 3D Structure - Steven White lab
Orientations of Proteins in Membranes (OPM) database
PDB-TM Trans Membrane protein database
Membrane Protein Structure Page
Bernard Trumpower lab: Cyt bc1 research
Thomas Link's bc1 page
Cytochrome Oxidase Home Page
Photosystem I Site
Fromme Lab for Biophysical Chemistry
Photosynthesis Links
bR Home Page
The Chaperonin Home Page
Ox. Phos. at Steve's place
Membrane Protein Structural Genomics of Mycobacterium tuberculosis
TransMembrane Protein DataBase
Cyanobacterial Bioenergetics Links on G. Peschek's lab page
Cytochrome bc1 discussion forum

Thermosynthetic origin of chemiosmotic energy conservation
Chemiosmotic Hypothesis- proved at last!
Alternative model of cell membranes
Aids/HIV connection controversy
Bovine bc1 monoclinic crystals

Biosci Bookmarks
Crystallography Bookmarks
Directory & reference Bookmarks
Sharon's homepage.

Structural Biology Division Home Page
LBNL Physical Biosciences Division
U.C. Berkeley
Return to LBNL homepage.

Page Owner Information:

If you have questions and comments, please contact, preferably via e-mail
Edward A. Berry,
Ernest Orlando Lawrence Berkeley National Laboratory
MailStop 64-R243
1 Cyclotron Road
Berkeley, CA 94720-8118
Phone: +1-510-486-4335
Fax: +1-530-323-9836

A good address for express delivery (FedEx) is:

Name:      DR. EDWARD BERRY          PHONE:	510-486-4335
Address1:  MAILSTOP 64-0121
City:      BERKELEY, CA 94720-8118